View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20923_low_2 (Length: 505)
Name: NF20923_low_2
Description: NF20923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20923_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 105; Significance: 3e-52; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 28 - 163
Target Start/End: Original strand, 7496623 - 7496759
Alignment:
| Q |
28 |
cccaaagctcaagctatgattcagatttcagacatgaaagagtgtcaagtttaattagagttaattcagtagtaagagtgcatcataaac-ttgaaatat |
126 |
Q |
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| T |
7496623 |
cccagagctcaagctatgattcagatttcagacatgaaagagtgtcaagtttaatgagagttaattcagtactaaaactgcatcataaactttgaaatat |
7496722 |
T |
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| Q |
127 |
ccaatagtaacaattgaaaataaatatggtcttttat |
163 |
Q |
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| T |
7496723 |
ccaatagtaacaattgaaaataaatagggtcttttat |
7496759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 336 - 496
Target Start/End: Original strand, 7499917 - 7500077
Alignment:
| Q |
336 |
gtagactagagtgaaagagtaaaacacatccaatccaattaccccaattgttctaaagatgaagacctagtcgatttaaacaaaatatttaaaaattggt |
435 |
Q |
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| T |
7499917 |
gtagactagagtgaagaagtaaaacacatccaatccaattaccacaattgttctaaccatgaaaacctagtagatttaaatgaaatatttaaaaattggt |
7500016 |
T |
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| Q |
436 |
acaaaccttttgaatcaagtacaatcctctccccattttgaattgcattcaggagaataat |
496 |
Q |
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| T |
7500017 |
ataaaccttttcaatcaaatataatcctctctccattttgaattgcattcacgagattaat |
7500077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 194 - 274
Target Start/End: Original strand, 7499371 - 7499451
Alignment:
| Q |
194 |
cgcagcctagaaatcaaaggataatgtattattgtttaccactttacttgttatctaatctcatactaccttcttccctaa |
274 |
Q |
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| T |
7499371 |
cgcaacctcgaaatcaatggataatgtattattgcattccacataacttgctatctaatctcatattaccttcgtccctaa |
7499451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 284 - 325
Target Start/End: Original strand, 7499539 - 7499580
Alignment:
| Q |
284 |
aatttcttaatgaattaattatttctaaaacaacatatctat |
325 |
Q |
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| T |
7499539 |
aatttcttagtgaattaattagttctaaaacaacatatctat |
7499580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 493
Target Start/End: Original strand, 7509132 - 7509165
Alignment:
| Q |
460 |
tcctctccccattttgaattgcattcaggagaat |
493 |
Q |
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| T |
7509132 |
tcctctccccattttgaattgcattaaggagaat |
7509165 |
T |
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