View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20923_low_5 (Length: 252)
Name: NF20923_low_5
Description: NF20923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20923_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 23041029 - 23041244
Alignment:
| Q |
18 |
gtttgatgtgtttaagatacctaaaagcatgtgcttttcttcatttcattgttttaattttgatgtgtttaagatagctaaaaacatgtgtttttcttcg |
117 |
Q |
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| T |
23041029 |
gtttgatgtgtttaagatacctaaaagcatgtgcttttcttcatttcattgttttaattttgatgtgtttaagatagctaaaagcatgtgtttttcttgg |
23041128 |
T |
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| Q |
118 |
atctgttatgatgtttgtattaggatggaagatcatgttgaagttgctcgtccttttgatgatatcaaagatattgatgattcaaaagacatgtggactc |
217 |
Q |
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| T |
23041129 |
atctgttatgatgtttgtattaggatggaagatcatgttgaagttgctcgtccttttgatgatatcaaagatat-----catcaaaagacatctggactc |
23041223 |
T |
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| Q |
218 |
tgtcagttaggatcgttgatg |
238 |
Q |
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||||| ||||||||||||||| |
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| T |
23041224 |
tgtcaattaggatcgttgatg |
23041244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 23557043 - 23556982
Alignment:
| Q |
138 |
taggatggaagatcatgttgaagttgctcgtccttttgatgatatcaaagatattgatgatt |
199 |
Q |
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| T |
23557043 |
taggatggaagatcatgctgaagttgctcgtccttttgatgatatcaaagatatcgatgatt |
23556982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 27587379 - 27587600
Alignment:
| Q |
18 |
gtttgatgtgtttaagatacctaaaagcatgtgcttttcttcatttcattgttttaatttt-gatgtgtttaagatagctaaaaacatgtgtttttcttc |
116 |
Q |
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||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||| |
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| T |
27587379 |
gtttgatgtgtttaagatacctaaaagcatgtgtttttctacatttcattgttttaatttttgatgtgtttaagatagctaaaagcatgagtttttcttg |
27587478 |
T |
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| Q |
117 |
gatctgttatgatgtttgtattaggatggaagatcatgttgaagttgctcgtccttttgatgatatcaaagatattgatgattcaaaagacatgtggact |
216 |
Q |
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||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
27587479 |
gatctgttatgctgtttgtattaggatggaagatcatattgaagttgctcgtccttttgatgatatcaaagatattgatgattcaaaagacatctggact |
27587578 |
T |
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| Q |
217 |
ctgtcagttaggatcgttgatg |
238 |
Q |
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||| ||||||| |||||||||| |
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| T |
27587579 |
ctgccagttagaatcgttgatg |
27587600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 133
Target Start/End: Complemental strand, 23972147 - 23972069
Alignment:
| Q |
56 |
cttcatttcattgttttaatttt-gatgtgtttaagatagctaaaaacatgtgtttttcttcgatctgttatgatgttt |
133 |
Q |
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|||||||| ||||||||||||| ||||||||||| || |||||| |||||||| |||| |||||||||||||||| |
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| T |
23972147 |
cttcatttgtttgttttaatttttgatgtgtttaatatcactaaaagtatgtgtttatcttgcatctgttatgatgttt |
23972069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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