View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20923_low_6 (Length: 233)
Name: NF20923_low_6
Description: NF20923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20923_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 5571144 - 5571359
Alignment:
| Q |
1 |
aatggacaaatctttggccgtgtaaagaaatcagcacactcaatcactgatctctgaaaaggaagatcatgtatacaattcttcccaacatcaagaacac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5571144 |
aatggacaaatctttggccgtgtaaagaaatcagcacactcaatcaatgatctctgaaaaggaagatcatgaatacaattcttcccaacatcaagaacac |
5571243 |
T |
|
| Q |
101 |
ctctttgaatcaacatcctacaaaaaggtcccacatgagtaaaatagttatctgacagtgaaaaattcaccaaattctccaaccctgcacacacaaaatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5571244 |
ctctttgaatcaacatcctacaaaaaggtcccacatgagtaaaatagttatctgacagtgaaaaattcaccaaattctccaaccctgcacacacaaaatc |
5571343 |
T |
|
| Q |
201 |
aggcaccattccataa |
216 |
Q |
| |
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|||||||||||||||| |
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| T |
5571344 |
aggcaccattccataa |
5571359 |
T |
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