View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20924_high_15 (Length: 238)

Name: NF20924_high_15
Description: NF20924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20924_high_15
NF20924_high_15
[»] chr4 (3 HSPs)
chr4 (1-219)||(55330615-55330833)
chr4 (165-215)||(55336217-55336267)
chr4 (46-110)||(55336092-55336156)
[»] chr2 (11 HSPs)
chr2 (14-106)||(8403745-8403837)
chr2 (60-136)||(8395749-8395825)
chr2 (60-223)||(8411867-8412030)
chr2 (60-223)||(8433965-8434128)
chr2 (45-106)||(8368103-8368164)
chr2 (45-106)||(8401246-8401307)
chr2 (45-106)||(8422823-8422884)
chr2 (60-136)||(8376063-8376139)
chr2 (60-136)||(8405747-8405823)
chr2 (64-136)||(8416952-8417024)
chr2 (60-106)||(8431018-8431064)


Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 55330615 - 55330833
Alignment:
Q  1 ttctcttccaatgtttcatcaacagtctcttccaacagcttaaggaatccaccacaatttctatacatttcaaataccataccaatttgtccaccatgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55330615 ttctcttccaatgtttcatcaacagtctcttccaacagcttaaggaatccaccacaatttctatacatttcaaataccataccaatttgtccaccatgtt 55330714  T
Q  101 caaaagcattcactacagcacctaatgaaccagccattaaagcaactatagctgcaacagaattgtttcctacaaatgcagaacctatagctgcaattcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55330715 caaaagcattcactacagcacctaatgaaccagccattaaagcaactatagctgcaacagaattgtttcctacaaatgcagaacctatagctgcaattcc 55330814  T
Q  201 agtgagtaatggaccagca 219  Q
    |||||||||||||||||||    
T  55330815 agtgagtaatggaccagca 55330833  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 55336217 - 55336267
Alignment:
Q  165 gtttcctacaaatgcagaacctatagctgcaattccagtgagtaatggacc 215  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  55336217 gtttcctacaaatgcagaacctattgctgcaattccagtgagtaatggacc 55336267  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 55336092 - 55336156
Alignment:
Q  46 aatccaccacaatttctatacatttcaaataccataccaatttgtccaccatgttcaaaagcatt 110  Q
    ||||||||||| ||||||||||||||||| |||||||||| |||||||||||| |||||| ||||    
T  55336092 aatccaccacagtttctatacatttcaaacaccataccaacttgtccaccatgctcaaaaccatt 55336156  T

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Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 8403745 - 8403837
Alignment:
Q  14 tttcatcaacagtctcttccaacagcttaaggaatccaccacaatttctatacatttcaaataccataccaatttgtccaccatgttcaaaag 106  Q
    |||| ||||| ||||||||||| |||| ||  ||||||||||| ||||||||||| ||||| |||||||||| |||||| ||||| |||||||    
T  8403745 tttcttcaactgtctcttccaaaagctcaaaaaatccaccacagtttctatacatctcaaacaccataccaacttgtcctccatgctcaaaag 8403837  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 136
Target Start/End: Complemental strand, 8395825 - 8395749
Alignment:
Q  60 tctatacatttcaaataccataccaatttgtccaccatgttcaaaagcattcactacagcacctaatgaaccagcca 136  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||| ||| | | ||| | | |||||||||||||    
T  8395825 tctatacatttcaaaaaccatgccaatttgtccaccatgttcaaaagtatttattgcagaagccaatgaaccagcca 8395749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 60 - 223
Target Start/End: Original strand, 8411867 - 8412030
Alignment:
Q  60 tctatacatttcaaataccataccaatttgtccaccatgttcaaaagcattcactacagcacctaatgaaccagccattaaagcaactatagctgcaaca 159  Q
    ||||||||||||||| ||||| |||| |||||||||||| ||||||| ||| ||  ||| | | |||||||||| || || || ||| |  || || | |    
T  8411867 tctatacatttcaaaaaccatgccaacttgtccaccatgctcaaaagtattaacagcagaagccaatgaaccagtcaatagaggaacaaatgcagccaaa 8411966  T
Q  160 gaattgtttcctacaaatgcagaacctatagctgcaattccagtgagtaatggaccagcaattg 223  Q
    ||| | || |||||||||| ||| || || ||||||||||| ||||||||||| || |||||||    
T  8411967 gaactattgcctacaaatgtagatccaattgctgcaattcctgtgagtaatggccctgcaattg 8412030  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 60 - 223
Target Start/End: Original strand, 8433965 - 8434128
Alignment:
Q  60 tctatacatttcaaataccataccaatttgtccaccatgttcaaaagcattcactacagcacctaatgaaccagccattaaagcaactatagctgcaaca 159  Q
    ||||||||||||||| ||||| |||| |||||||||||| ||||||| ||| ||  ||| | | |||||||||| || || || ||| |  || || | |    
T  8433965 tctatacatttcaaaaaccatgccaacttgtccaccatgctcaaaagtattaacagcagaagccaatgaaccagtcaatagaggaacaaatgcagccaaa 8434064  T
Q  160 gaattgtttcctacaaatgcagaacctatagctgcaattccagtgagtaatggaccagcaattg 223  Q
    ||| | || |||||||||| ||| || || ||||||||||| ||||||||||| || |||||||    
T  8434065 gaactattgcctacaaatgtagatccaattgctgcaattcctgtgagtaatggccctgcaattg 8434128  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 8368103 - 8368164
Alignment:
Q  45 gaatccaccacaatttctatacatttcaaataccataccaatttgtccaccatgttcaaaag 106  Q
    |||||||||||||  ||||||||||||| | |||||||||| |||||||||||| |||||||    
T  8368103 gaatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaag 8368164  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 8401307 - 8401246
Alignment:
Q  45 gaatccaccacaatttctatacatttcaaataccataccaatttgtccaccatgttcaaaag 106  Q
    |||||||||||||  ||||||||||||| | |||||||||| |||||||||||| |||||||    
T  8401307 gaatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaag 8401246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 8422884 - 8422823
Alignment:
Q  45 gaatccaccacaatttctatacatttcaaataccataccaatttgtccaccatgttcaaaag 106  Q
    |||||||||||||  ||||||||||||| | |||||||||| |||||||||||| |||||||    
T  8422884 gaatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaag 8422823  T

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Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 136
Target Start/End: Complemental strand, 8376139 - 8376063
Alignment:
Q  60 tctatacatttcaaataccataccaatttgtccaccatgttcaaaagcattcactacagcacctaatgaaccagcca 136  Q
    ||||||||||||||| ||||| |||| |||||||||||| ||||||| ||| | ||||| | | |||||||||||||    
T  8376139 tctatacatttcaaaaaccatgccaacttgtccaccatgctcaaaagtattaattacagaagccaatgaaccagcca 8376063  T

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Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 136
Target Start/End: Original strand, 8405747 - 8405823
Alignment:
Q  60 tctatacatttcaaataccataccaatttgtccaccatgttcaaaagcattcactacagcacctaatgaaccagcca 136  Q
    ||||||||||||||| ||||| |||| |||||||||||||||||||| ||| | | ||| | | |||||||||||||    
T  8405747 tctatacatttcaaaaaccatgccaacttgtccaccatgttcaaaagtattgattgcagaagccaatgaaccagcca 8405823  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 8416952 - 8417024
Alignment:
Q  64 tacatttcaaataccataccaatttgtccaccatgttcaaaagcattcactacagcacctaatgaaccagcca 136  Q
    ||||||||||| ||||| |||| |||||||||||| ||||||| ||| ||| ||| | | |||||||||||||    
T  8416952 tacatttcaaaaaccatgccaacttgtccaccatgctcaaaagtattaactgcagaagccaatgaaccagcca 8417024  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 106
Target Start/End: Original strand, 8431018 - 8431064
Alignment:
Q  60 tctatacatttcaaataccataccaatttgtccaccatgttcaaaag 106  Q
    ||||||||||||||| ||||| |||| |||||||||||| |||||||    
T  8431018 tctatacatttcaaaaaccatgccaacttgtccaccatgctcaaaag 8431064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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