View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20924_high_4 (Length: 418)
Name: NF20924_high_4
Description: NF20924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20924_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 19 - 413
Target Start/End: Complemental strand, 1553226 - 1552832
Alignment:
| Q |
19 |
cccaaaccattcaacacagcaccagatgttgcagctgccatttgtcttctagagataaagagtaatgagactggttttgtagttcacttgggaactgaac |
118 |
Q |
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| T |
1553226 |
cccaaaccattcaacacagcaccagatgttgcagctgccatttgtcttctagagataaagagtaatgagactggttttgtagttcacttgggaattgaac |
1553127 |
T |
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| Q |
119 |
tgaactagttagagagtattttatgagtgtgtgtgagaatctgaaggggttttcatagaaggccaagtaggacaatgaaatctaaacaagaaatcttaag |
218 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1553126 |
tgaactagttagagagtattttatgagtgtgtgagagaatctgaaggggttttcatagaaggccaagtaggacaatgaaatctaaacaagaaatcttaag |
1553027 |
T |
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| Q |
219 |
gtatatcgtggatagattttggaccaataggaaatggatttccatcctcagctgatttggcttccaaccacgtggacactatgttccactccactgtgct |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1553026 |
gtatatcgtggatagattttggaccaataggaaatggatttccatcctcagctgatttggcttccaaccacgtggacactatgttccactccactgtgct |
1552927 |
T |
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| Q |
319 |
ctttctatcttttgctattgttgatgttaatttaggtagataaacacaagcaaatgcaaacaaaaaccaatttaatgaagtaagatgtgtctgtg |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1552926 |
ctttctatcttttgctattgttgatgttaatttaggtagataaacacaagcaaatgcaaacaaaaaccaatttaatgaagtaagatgtgtctgtg |
1552832 |
T |
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