View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20924_high_5 (Length: 399)
Name: NF20924_high_5
Description: NF20924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20924_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 18 - 387
Target Start/End: Original strand, 146905 - 147274
Alignment:
| Q |
18 |
atcatgcatccatccatcctactcccaaccttcaagaccatactatccttcatgaggtaaatttaaagagctagtggaatactatccttagaaatagatc |
117 |
Q |
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| T |
146905 |
atcatgcatccatccatcctactcccaaccttcaagaccatactatccttcatgaggtaaatttaaagagctagtggaatactatccttagaaatagatc |
147004 |
T |
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| Q |
118 |
gataaacacccacctttttggatgccccctctatgttcggcttgaggttgtctcttactatttaatatagtacactctagggtaatgcaatgatacgtga |
217 |
Q |
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| T |
147005 |
gataaacacccacctttttggatgccccctctatgttcggcttgaggttgtctcttactatttaatatagtacattctagggtaatgcaatgatacatga |
147104 |
T |
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| Q |
218 |
atgatatagatgacaggtttatatcctattattcttacctgagaaagataaaccatttgtttaatttcatcaatacttaatcgtttttgcgagggtggtc |
317 |
Q |
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| T |
147105 |
atgatatagatgacaggtttatatcctattattcttacctgagaaagataaaccatttgtttaatttcatcaatacttaatcgtttttgcgagggtggtc |
147204 |
T |
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| Q |
318 |
ttgctttcatgatctcttcttgctcttcctacaagataaagacaaagaatgattgattaccatgttcctt |
387 |
Q |
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| T |
147205 |
ttgctttcatgatctcttcttgctcttcctacaagataaagacaaagaatgattgattaccatgttcctt |
147274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 252 - 376
Target Start/End: Original strand, 127014 - 127138
Alignment:
| Q |
252 |
ttacctgagaaagataaaccatttgtttaatttcatcaatacttaatcgtttttgcgagggtggtcttgctttcatgatctcttcttgctcttcctacaa |
351 |
Q |
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| T |
127014 |
ttacctgagaaagataaatcattttcttaatttcctcaatacttaatcgtttttgggaggttgatcttgctttcaaaattccttcttgctcttcctacaa |
127113 |
T |
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| Q |
352 |
gataaagacaaagaatgattgatta |
376 |
Q |
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| T |
127114 |
aataaagataaagaatgatttatta |
127138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 236 - 380
Target Start/End: Original strand, 3958596 - 3958740
Alignment:
| Q |
236 |
ttatatcctattattcttacctgagaaagataaaccatttgtttaatttcatcaatacttaatcgtttttgcgagggtggtcttgctttcatgatctctt |
335 |
Q |
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|||||||||| |||| ||||||||||||||||| ||||| | |||||| |||||||||||||||||||| ||||||||||||||||||| ||| |||| |
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| T |
3958596 |
ttatatcctactatttttacctgagaaagataagtcattttctgaatttcctcaatacttaatcgtttttgtgagggtggtcttgctttcaagatttctt |
3958695 |
T |
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| Q |
336 |
cttgctcttcctacaagataaagacaaagaatgattgattaccat |
380 |
Q |
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| T |
3958696 |
cttgctcttcctacaagataaagaaaaagaatatttgactaccat |
3958740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 356
Target Start/End: Original strand, 11803663 - 11803767
Alignment:
| Q |
252 |
ttacctgagaaagataaaccatttgtttaatttcatcaatacttaatcgtttttgcgagggtggtcttgctttcatgatctcttcttgctcttcctacaa |
351 |
Q |
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||||||||||||||||||||||||| ||||| || | | ||||||| |||| || | || ||||| || || ||||| || ||||| ||||||||||| |
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| T |
11803663 |
ttacctgagaaagataaaccatttgcttaatctccttataacttaattgtttctgtgtggacggtctagcctttatgatttcctcttgttcttcctacaa |
11803762 |
T |
|
| Q |
352 |
gataa |
356 |
Q |
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|||| |
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|
| T |
11803763 |
aataa |
11803767 |
T |
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