View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20924_high_9 (Length: 314)
Name: NF20924_high_9
Description: NF20924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20924_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 17 - 305
Target Start/End: Original strand, 48466509 - 48466797
Alignment:
| Q |
17 |
aacaaaaacacagtgcatggttctctaaacaatgtaatacctttgtaacaaatattatcaaataaaaacttctgattcacgctatatggattcagaaatc |
116 |
Q |
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| T |
48466509 |
aacaaaaacacagtgcatggttctctaaacaatgtaatacctttgtaacaaataatatcaaataaaaacttctgattcacactatatggattcagaaatc |
48466608 |
T |
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| Q |
117 |
agaattacagtttaccaaaagtagcaaaaatcaaaacagatacaagttaccaaaagaagaaaataacttgcaccttttagcttgtatagtattgtgagct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
48466609 |
agaattacagtttaccaaaagtagcaaaaatcaaaacaaatacaagttaccaaaagaagaaaataacttgcaccttttatcttgtatagtattgtgagct |
48466708 |
T |
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| Q |
217 |
tgtatatcaaccatttttattttccgtctatggaattcaacatgagtgttttcaaaatgaagactatacataaagttctacattcatct |
305 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
48466709 |
tgtatatcaaccatatttattttccgtctatggaattcaacatgagtgttttcaaaataaagactatacataaagttctacattcatct |
48466797 |
T |
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