View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20924_low_12 (Length: 311)
Name: NF20924_low_12
Description: NF20924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20924_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 8299630 - 8299923
Alignment:
| Q |
1 |
tattaaatggagaaattaaaaccagccaactagatgtttataaatgagccgattgtagtgcagatcttcagcattcactcgtgagactattgaaggaacc |
100 |
Q |
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| T |
8299630 |
tattaaatggagaaataaaaaccagccaactagatgtttataaatgagccgattgtagtgcagatcttcagcattcattcgtgagactattgaaggaacc |
8299729 |
T |
|
| Q |
101 |
acacacttacatgatcaatgatgctgatctatatctatctacctgcaaatgaaagacaacggaaggaaaacaatacataatcagtatcaatattaaagtt |
200 |
Q |
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| T |
8299730 |
acacacttacatgatcaatgatgctgatctatatctatctacctgcaaatgaaagacaacggaaggaaaacaatacataatcagtatcaatattaaagtt |
8299829 |
T |
|
| Q |
201 |
accattttcatattatatagtacaatcaatcctaatcctagataactacctaaaaacaattcaaataatatctatacaaggcataggaaaaatc |
294 |
Q |
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| T |
8299830 |
accattttcatattatatagtacattcaattctaatcctagataactacctaaaaaccattcaaataatatctatacaaggcatatgcaaaatc |
8299923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 115 - 285
Target Start/End: Original strand, 8309215 - 8309391
Alignment:
| Q |
115 |
tcaatgatgctgatctatatctatctacctgcaaatgaaagacaacggaaggaaaacaatacataatcagtatcaatattaa------agttaccatttt |
208 |
Q |
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||||||||||| || ||||||||||| ||||||||||||||| |||||||| ||| |||| ||||||| ||| |||||||| ||||||| |||| |
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| T |
8309215 |
tcaatgatgctaatttatatctatcttcctgcaaatgaaagaaaacggaagcaaattaatatataatcaatatgaatattaataacaaagttaccttttt |
8309314 |
T |
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| Q |
209 |
catattatatagtacaatcaatcctaatcctagataactacctaaaaacaattcaaataatatctatacaaggcata |
285 |
Q |
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| T |
8309315 |
catattatatagtacaatcaatcctggtcctagatagctacataaaaaccattcaagtaatatctatacaagacata |
8309391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 267
Target Start/End: Complemental strand, 21120882 - 21120775
Alignment:
| Q |
158 |
aacggaaggaaaacaatacataatcagtatcaatattaaagttaccattttcatattatatagtacaatcaatcctaatcctagataactacctaaaaac |
257 |
Q |
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|||| ||||||| ||||||| ||||| ||| |||| ||||||||||||||||||| ||||||| ||||||||||||| ||||||| || | ||||||| |
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| T |
21120882 |
aacgaaaggaaatcaatacaaaatcaatattaataacaaagttaccattttcatat--tatagtagaatcaatcctaattctagatagctgcataaaaac |
21120785 |
T |
|
| Q |
258 |
aattcaaata |
267 |
Q |
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|||||||| |
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|
| T |
21120784 |
ccttcaaata |
21120775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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