View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20924_low_15 (Length: 285)

Name: NF20924_low_15
Description: NF20924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20924_low_15
NF20924_low_15
[»] chr2 (9 HSPs)
chr2 (1-268)||(6915278-6915545)
chr2 (124-222)||(10543505-10543603)
chr2 (124-222)||(10471307-10471405)
chr2 (124-222)||(28106207-28106305)
chr2 (142-222)||(27966389-27966469)
chr2 (124-222)||(10859023-10859121)
chr2 (143-205)||(9081351-9081413)
chr2 (151-215)||(10505487-10505551)
chr2 (228-268)||(10507349-10507389)
[»] chr7 (3 HSPs)
chr7 (124-222)||(15044800-15044898)
chr7 (42-127)||(15043976-15044061)
chr7 (224-266)||(15045570-15045612)
[»] chr5 (1 HSPs)
chr5 (124-222)||(33601026-33601124)


Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 6915545 - 6915278
Alignment:
Q  1 ataaaatcacccttccgaatgactacctcataaactcgtagatatattaactgaccaaacttcctttgctccaacttgaaagccaatgctacaaggggcc 100  Q
    |||||||||||||||||||||||  |||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  6915545 ataaaatcacccttccgaatgacaccctcataaactcttagatatgttaactgaccaaacttcgtttgctccaacttgaaagccaatgctacaagaggcc 6915446  T
Q  101 catcgggacttccagtcagctgaaccttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6915445 catcgggacttccagtcagctgaaccttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataactaactacacc 6915346  T
Q  201 atccagaagtggttgtacccccgtgtttttgacagcactacccatgaataccggtataaatttccgtg 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6915345 atccagaagtggttgtacccccgtgtttttgacagcactacccatgaataccggtataaatttccgtg 6915278  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 124 - 222
Target Start/End: Original strand, 10543505 - 10543603
Alignment:
Q  124 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 222  Q
    ||||| |||||||||||||||||| | ||||||||||||||| ||||| | ||||| ||||||||| ||| ||||||||||| |||| |||||| ||||    
T  10543505 accttttcctcattcttggattggacgagagcataattactagcttcagttggacacggcaaataattaagtacaccatccaaaagtagttgtaacccc 10543603  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 124 - 222
Target Start/End: Original strand, 10471307 - 10471405
Alignment:
Q  124 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 222  Q
    ||||| ||||||||||| |||||| | ||||||||||||||| ||||| | ||||| ||||||||| ||| ||||||||||| |||| |||||| ||||    
T  10471307 accttttcctcattcttagattggacgagagcataattactagcttcagttggacacggcaaataattaagtacaccatccaaaagtagttgtagcccc 10471405  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 124 - 222
Target Start/End: Complemental strand, 28106305 - 28106207
Alignment:
Q  124 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 222  Q
    ||||| ||| ||| ||| ||||||||||||| |||||||||| ||||||| ||||| ||||||||| ||| ||||||||||| |||| |||||| ||||    
T  28106305 accttttccccatgcttagattggtcaagagtataattactagcttcaattggacacggcaaataattaattacaccatccaaaagtagttgtagcccc 28106207  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 27966389 - 27966469
Alignment:
Q  142 gattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 222  Q
    ||||||||||||| |||||||||| ||||||| ||||| ||||||||| ||| ||||||||||| |||| |||||| ||||    
T  27966389 gattggtcaagagtataattactagcttcaattggacacggcaaataattaattacaccatccaaaagtagttgtagcccc 27966469  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 124 - 222
Target Start/End: Original strand, 10859023 - 10859121
Alignment:
Q  124 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 222  Q
    ||||| ||| ||||||| |||| ||| |||| |||||||||||||||| | ||||| ||||||||| ||  ||||||||||| |||| |||||| ||||    
T  10859023 accttttccccattcttagatttgtcgagagaataattactaacttcagttggacagggcaaataattagttacaccatccaaaagtagttgtagcccc 10859121  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 9081413 - 9081351
Alignment:
Q  143 attggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatcca 205  Q
    ||||||| || |||||||||||  ||||||| ||||| ||||||||| ||| |||||||||||    
T  9081413 attggtcgagcgcataattacttgcttcaattggacacggcaaataattaagtacaccatcca 9081351  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 10505487 - 10505551
Alignment:
Q  151 agagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttg 215  Q
    ||||||||||||||| ||||| | ||||| ||||||||| |||  |||||||||| |||| ||||    
T  10505487 agagcataattactagcttcagttggacacggcaaataattaagcacaccatccaaaagtagttg 10505551  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 268
Target Start/End: Original strand, 10507349 - 10507389
Alignment:
Q  228 tttgacagcactacccatgaataccggtataaatttccgtg 268  Q
    ||||| |||||| ||||||||||| ||||||||||||||||    
T  10507349 tttgaaagcactgcccatgaatacgggtataaatttccgtg 10507389  T

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Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 124 - 222
Target Start/End: Original strand, 15044800 - 15044898
Alignment:
Q  124 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 222  Q
    ||||||||||| || || ||||||||||| ||||||||| |||||||||| ||||| ||||||||| ||| ||||||||||||||||||||||| ||||    
T  15044800 accttctcctccttattagattggtcaagggcataattattaacttcaattggacatggcaaataactaagtacaccatccagaagtggttgtatcccc 15044898  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 42 - 127
Target Start/End: Original strand, 15043976 - 15044061
Alignment:
Q  42 atatattaactgaccaaacttcctttgctccaacttgaaagccaatgctacaaggggcccatcgggacttccagtcagctgaacct 127  Q
    |||| ||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||| | |||| ||||| |||||    
T  15043976 atatgttagctgaccaaacttactttcctccaacttgaaagccaatgctacaaggggcccatcaggattaccaggcagctcaacct 15044061  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 224 - 266
Target Start/End: Original strand, 15045570 - 15045612
Alignment:
Q  224 tgtttttgacagcactacccatgaataccggtataaatttccg 266  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  15045570 tgtttttgaaagcactacccatgaataccggtataaatttccg 15045612  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 222
Target Start/End: Original strand, 33601026 - 33601124
Alignment:
Q  124 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 222  Q
    ||||| ||||||||||| ||||||   |||||||||||| |  ||||| | ||||| ||||||| | |||  |||||||||| ||||||||||| ||||    
T  33601026 accttttcctcattcttagattggatgagagcataattagttgcttcagttggacacggcaaattattaagcacaccatccaaaagtggttgtagcccc 33601124  T

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