View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20924_low_2 (Length: 753)

Name: NF20924_low_2
Description: NF20924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20924_low_2
NF20924_low_2
[»] chr7 (14 HSPs)
chr7 (15-132)||(26241969-26242086)
chr7 (15-106)||(26297043-26297134)
chr7 (23-106)||(26178681-26178764)
chr7 (15-113)||(26154794-26154892)
chr7 (15-132)||(26250408-26250534)
chr7 (22-100)||(26184876-26184954)
chr7 (23-97)||(19104013-19104087)
chr7 (15-80)||(26128191-26128256)
chr7 (22-97)||(26082337-26082412)
chr7 (22-97)||(26106124-26106199)
chr7 (614-722)||(26295895-26296005)
chr7 (23-100)||(26190869-26190946)
chr7 (15-83)||(26301432-26301500)
chr7 (620-666)||(32083997-32084043)
[»] chr4 (2 HSPs)
chr4 (23-96)||(44902849-44902922)
chr4 (619-673)||(18990908-18990962)
[»] chr3 (1 HSPs)
chr3 (614-673)||(36073083-36073142)
[»] chr8 (1 HSPs)
chr8 (621-673)||(5061071-5061123)
[»] chr1 (1 HSPs)
chr1 (622-666)||(31361068-31361112)
[»] chr2 (1 HSPs)
chr2 (614-673)||(19002350-19002409)


Alignment Details
Target: chr7 (Bit Score: 82; Significance: 3e-38; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 15 - 132
Target Start/End: Complemental strand, 26242086 - 26241969
Alignment:
Q  15 catagggttcatatggccagcagatggatatggaagaaaaacaacatgaagtttgttatgggattgttgggactccattgttgcttggttctattactgg 114  Q
    |||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |    
T  26242086 catagggttcatatggccaatagctggatatggaagaaaaacaacatgaagtttgttatgggattgttgagattccattgttgcttggttctattactag 26241987  T
Q  115 gaaagttgttatttaagg 132  Q
    || | ||| |||||||||    
T  26241986 gagaattgatatttaagg 26241969  T

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Target: chr7; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 15 - 106
Target Start/End: Complemental strand, 26297134 - 26297043
Alignment:
Q  15 catagggttcatatggccagcagatggatatggaagaaaaacaacatgaagtttgttatgggattgttgggactccattgttgcttggttct 106  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  26297134 catagggttcatatgaccagcagatggatatggaagaaagacaacatgaagtttgttattggattgttgagactccattgttgcttggttct 26297043  T

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Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 26178764 - 26178681
Alignment:
Q  23 tcatatggccagcagatggatatggaagaaaaacaacatgaagtttgttatgggattgttgggactccattgttgcttggttct 106  Q
    ||||||| |||| || |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  26178764 tcatatgaccaggagttggaaatggaagaaaaacaacatgaagtttgttatgggattgttgagactccattgttgcttggttct 26178681  T

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Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 26154892 - 26154794
Alignment:
Q  15 catagggttcatatggccagcagatggatatggaagaaaaacaacatgaagtttgttatgggattgttgggactccattgttgcttggttctattactg 113  Q
    |||||| ||||||||||||| |  ||||| ||||||||||   |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  26154892 cataggattcatatggccaggacttggatgtggaagaaaagttacatgaagttggttatgggattgttgagactccattgttgcttggttctattactg 26154794  T

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Target: chr7; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 15 - 132
Target Start/End: Complemental strand, 26250534 - 26250408
Alignment:
Q  15 catagggttcatatggccagcagatggatatggaagaaaaacaacatgaagtttgttatgggattgtt---------gggactccattgttgcttggttc 105  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||         | || ||||||||||||||||||    
T  26250534 catagggttcatatgaccagcagatggatatggaagaaaaacaacatgaagttggttattggattgttgagattgaggagaatccattgttgcttggttc 26250435  T
Q  106 tattactgggaaagttgttatttaagg 132  Q
    |||||||  || ||||| |||||||||    
T  26250434 tattactaagagagttgatatttaagg 26250408  T

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Target: chr7; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 22 - 100
Target Start/End: Complemental strand, 26184954 - 26184876
Alignment:
Q  22 ttcatatggccagcagatggatatggaagaaaaacaacatgaagtttgttatgggattgttgggactccattgttgctt 100  Q
    ||||||||||||| || ||||||||||| |||||  |||||||||||||||||||||| |||||| |||||||||||||    
T  26184954 ttcatatggccaggagttggatatggaacaaaaattacatgaagtttgttatgggattattgggagtccattgttgctt 26184876  T

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Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 19104013 - 19104087
Alignment:
Q  23 tcatatggccagcagatggatatggaagaaaaacaacatgaagtttgttatgggattgttgggactccattgttg 97  Q
    |||||||||| | || ||||||||||||||||   |||||||||| ||||||||||||||| || ||||||||||    
T  19104013 tcatatggcctggagttggatatggaagaaaagttacatgaagttggttatgggattgttgagattccattgttg 19104087  T

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Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 26128256 - 26128191
Alignment:
Q  15 catagggttcatatggccagcagatggatatggaagaaaaacaacatgaagtttgttatgggattg 80  Q
    |||||| ||||||||||||| |  |||||||| |||||||||||||||||||| ||||||| ||||    
T  26128256 cataggattcatatggccaggacttggatatgaaagaaaaacaacatgaagttggttatggaattg 26128191  T

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Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 22 - 97
Target Start/End: Complemental strand, 26082412 - 26082337
Alignment:
Q  22 ttcatatggccagcagatggatatggaagaaaaacaacatgaagtttgttatgggattgttgggactccattgttg 97  Q
    ||||||||||||| || ||||||||||| |||||  |  ||||||| |||||| |||||||| |||||||||||||    
T  26082412 ttcatatggccaggagttggatatggaacaaaaattatctgaagttggttatgagattgttgagactccattgttg 26082337  T

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Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 22 - 97
Target Start/End: Complemental strand, 26106199 - 26106124
Alignment:
Q  22 ttcatatggccagcagatggatatggaagaaaaacaacatgaagtttgttatgggattgttgggactccattgttg 97  Q
    ||||||||||||| || ||||||||||| |||||  |  ||||||| |||||| |||||||| |||||||||||||    
T  26106199 ttcatatggccaggagttggatatggaacaaaaattatctgaagttggttatgagattgttgagactccattgttg 26106124  T

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Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 614 - 722
Target Start/End: Complemental strand, 26296005 - 26295895
Alignment:
Q  614 aaagaagtcaaatgttcaaagcaaattagacacc-tttagaaaaagaaatacaaacttaatattccaagatg-ttaagggcaacaaattcaaaaataaat 711  Q
    |||||||||||||| | |||||||| |||||||| ||| | |||| |||||| ||||||||    ||||||| |||| |||| |||||||||||  ||||    
T  26296005 aaagaagtcaaatgctgaaagcaaaatagacacctttttggaaaacaaataccaacttaatccctcaagatgattaaaggcagcaaattcaaaaccaaat 26295906  T
Q  712 taaacattttt 722  Q
    |||||||||||    
T  26295905 taaacattttt 26295895  T

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Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 26190946 - 26190869
Alignment:
Q  23 tcatatggccagcagatggatatggaagaaaaacaacatgaagtttgttatgggattgttgggactccattgttgctt 100  Q
    |||||||||||| ||||||| |||||||||||   |||||||||  ||||||||||||||| || | |||| ||||||    
T  26190946 tcatatggccaggagatggaaatggaagaaaagttacatgaagtgggttatgggattgttgagatttcattattgctt 26190869  T

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Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 26301500 - 26301432
Alignment:
Q  15 catagggttcatatggccagcagatggatatggaagaaaaacaacatgaagtttgttatgggattgttg 83  Q
    |||||| |||||||| |||| || |||| ||||||||||||  |||||||||| ||||| |||||||||    
T  26301500 cataggattcatatgaccaggagttggaaatggaagaaaaattacatgaagttggttattggattgttg 26301432  T

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Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 620 - 666
Target Start/End: Original strand, 32083997 - 32084043
Alignment:
Q  620 gtcaaatgttcaaagcaaattagacacctttagaaaaagaaatacaa 666  Q
    |||||||||||||||||||| ||| |||||||  |||||||||||||    
T  32083997 gtcaaatgttcaaagcaaatgagatacctttaagaaaagaaatacaa 32084043  T

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Target: chr4 (Bit Score: 46; Significance: 8e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 44902922 - 44902849
Alignment:
Q  23 tcatatggccagcagatggatatggaagaaaaacaacatgaagtttgttatgggattgttgggactccattgtt 96  Q
    |||||||||||| || |||||||||||||||||| |||||||||| ||||| ||||||||| || |||||||||    
T  44902922 tcatatggccaggagttggatatggaagaaaaactacatgaagttggttattggattgttgagaatccattgtt 44902849  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 619 - 673
Target Start/End: Original strand, 18990908 - 18990962
Alignment:
Q  619 agtcaaatgttcaaagcaaattagacacctttagaaaaagaaatacaaacttaat 673  Q
    |||||||||||||||||||| |||| ||||||| || ||||||| ||| ||||||    
T  18990908 agtcaaatgttcaaagcaaaatagaaacctttataagaagaaatgcaagcttaat 18990962  T

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Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 614 - 673
Target Start/End: Original strand, 36073083 - 36073142
Alignment:
Q  614 aaagaagtcaaatgttcaaagcaaattagacacctttagaaaaagaaatacaaacttaat 673  Q
    |||| ||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||    
T  36073083 aaaggagtcaaatgatcaaagcaaattagaaacctttagaaaaagaaatacaagcttaat 36073142  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 621 - 673
Target Start/End: Original strand, 5061071 - 5061123
Alignment:
Q  621 tcaaatgttcaaagcaaattagacacctttagaaaaagaaatacaaacttaat 673  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||| ||||||    
T  5061071 tcaaatgttcaaagcaaattagaaacctttagaaaatgaaatacaagcttaat 5061123  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 622 - 666
Target Start/End: Complemental strand, 31361112 - 31361068
Alignment:
Q  622 caaatgttcaaagcaaattagacacctttagaaaaagaaatacaa 666  Q
    ||||| |||||||||||||||| ||||||||| ||||||||||||    
T  31361112 caaattttcaaagcaaattagaaacctttagagaaagaaatacaa 31361068  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 614 - 673
Target Start/End: Original strand, 19002350 - 19002409
Alignment:
Q  614 aaagaagtcaaatgttcaaagcaaattagacacctttagaaaaagaaatacaaacttaat 673  Q
    |||| ||| ||||||| ||||||||||||| ||| |||| ||||||||||||| ||||||    
T  19002350 aaaggagttaaatgttgaaagcaaattagaaaccattagtaaaagaaatacaagcttaat 19002409  T

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