View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20924_low_3 (Length: 626)
Name: NF20924_low_3
Description: NF20924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20924_low_3 |
 | |
|
| [»] scaffold0035 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 496; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 34 - 614
Target Start/End: Complemental strand, 1749019 - 1748437
Alignment:
| Q |
34 |
tgagtggctgcttttgctatttcttttcgctattagttgaagattataatttgaaatagcgatgttgtgtcgttcttgctttgctttttccctattctat |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1749019 |
tgagtggctgcttttgctatttcttttcgctattagttgaagattataatttgaaatagcgatgttgtgtcgttcttgctttgctttttccctattctat |
1748920 |
T |
|
| Q |
134 |
attatgattttttccaaatttgctaggaaacctacatcaaatcataaaggaaccataagttgttattactgctattgttgttggtttgctactgctgctc |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1748919 |
attatgattttttccaaatttgctaggaaacctacatcaaatcataaaggaaccataagttgttattactgctattgttgttggtttgctactgctgctc |
1748820 |
T |
|
| Q |
234 |
taaatgggagtcataacat-aaagttttttcaatcagattttgggtcattttcttcatggtaaacggatgaaagagccaaatgtagccgagtttatatta |
332 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1748819 |
taaatgggagtcataacataaaagttttttcaatcagattttgggtcattttcttcatggtaaacggatgaaagagccaaatgtagccgagtttatatta |
1748720 |
T |
|
| Q |
333 |
gcactagctggtgtaggc-nnnnnnnnnnnnntggttatggcatgtgctacttcagcaggctctaccacactagctttagttgttgttgttaatcaaatt |
431 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1748719 |
gcactagctggtgtaagcaaaaaaaaaaaaaatggttatggcatgtgctacttcagcaggctctaccacactagctttagttgttgttgttaatcaaatt |
1748620 |
T |
|
| Q |
432 |
agtggtggctaagtcatttgcattgtcgcaaaccatgaagatctaagggcctaattcaatttcatggttggaaaagatcaaataccaatgttagaccaat |
531 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1748619 |
agtggtggctaagtcatttgcattgtcgcaaaccatgaagatctaagggcctaattcaatttcatggttggaaaagatcaaataccaatgtttgaccaat |
1748520 |
T |
|
| Q |
532 |
atgaatgagcannnnnnnngcaaattgactgtaatcttaagagtttgacaaattaaattattgtttttgtactgcctttgctt |
614 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1748519 |
atgaatgagcattttttttgcaaattgactgtaatcttaagagtttgacaaattaaattattgtttttgtactgcctttgctt |
1748437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 144 - 496
Target Start/End: Original strand, 20686385 - 20686739
Alignment:
| Q |
144 |
tttccaaatttgctaggaaacctacatcaaatcataaaggaaccataagttgttattactgctattgttgttggtttgctactgctgctctaaatgggag |
243 |
Q |
| |
|
||||||||||||| ||||||||| | ||||||| ||||||| |||||||||||| ||||||| ||||| | | |||| ||||||| ||||||||||||| |
|
|
| T |
20686385 |
tttccaaatttgccaggaaacctgcgtcaaatcgtaaaggagccataagttgttgttactgccattgtcgcttctttgttactgcttctctaaatgggag |
20686484 |
T |
|
| Q |
244 |
tcataacataaagttttttcaatcagattttgggtcattttcttcatggtaaacggatgaaagagccaaatgtagccgagtttatattagcactagctgg |
343 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
20686485 |
tcataacgtaaagttttttcaatcagattttgggtcattttcttcatggtaaaaggatcaaagagccaaatgtagccgagtttatattagccctagctgg |
20686584 |
T |
|
| Q |
344 |
tgtaggc--nnnnnnnnnnnnntggttatggcatgtgctacttcagcaggctctaccacactagctttagttgttgttgttaatcaaattagtggtggct |
441 |
Q |
| |
|
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
20686585 |
tgtaagcaaaaaaaaaaacagatggttatggcatgtgctacttcagcaggctctaccacactagctttagttgtcgttgttaatcaaattggtggtggct |
20686684 |
T |
|
| Q |
442 |
aagtcatttgcattgtcgcaaaccatgaagatctaagggcctaattcaatttcat |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
20686685 |
aagtcatttgcattgtcgcaaaccatgaagatctaagggcctaattcagtttcat |
20686739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 35 - 211
Target Start/End: Original strand, 20686192 - 20686368
Alignment:
| Q |
35 |
gagtggctgcttttgctatttcttttcgctattagttgaagattataatttgaaatagcgatgttgtgtcgttcttgctttgctttttccctattctata |
134 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
20686192 |
gagtggctgcttttgttatttattttcgctattatttgaagattataatttgaaatattgatgttgtgtcgttcctgctttgctttttcaatattctata |
20686291 |
T |
|
| Q |
135 |
ttatgattttttccaaatttgctaggaaacctacatcaaatcataaaggaaccataagttgttattactgctattgt |
211 |
Q |
| |
|
| |||||||||||||||||||| ||||||||| | ||||||||||||||| |||||||||||| ||||||| ||||| |
|
|
| T |
20686292 |
tcatgattttttccaaatttgccaggaaacctgcgtcaaatcataaaggagccataagttgttgttactgccattgt |
20686368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 551 - 614
Target Start/End: Original strand, 20686772 - 20686835
Alignment:
| Q |
551 |
gcaaattgactgtaatcttaagagtttgacaaattaaattattgtttttgtactgcctttgctt |
614 |
Q |
| |
|
|||||||||||| |||||||||||| | || |||||||||||||||||| |||| ||||||||| |
|
|
| T |
20686772 |
gcaaattgactgcaatcttaagagtctaacgaattaaattattgtttttatactacctttgctt |
20686835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 34 - 614
Target Start/End: Complemental strand, 42383926 - 42383346
Alignment:
| Q |
34 |
tgagtggctgcttttgctatttcttttcgctattagttgaagattataatttgaaatagcgatgttgtgtcgttcttgctttgctttttccctattctat |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42383926 |
tgagtggctgcttttgctatttcttttcgctattagttgaagattataatttgaaatagcgatgttgtgtcgttcttgctttgctttttccctattctat |
42383827 |
T |
|
| Q |
134 |
attatgattttttccaaatttgctaggaaacctacatcaaatcataaaggaaccataagttgttattactgctattgttgttggtttgctactgctgctc |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42383826 |
attatgattttttccaaatttgctaggaaacctacatcaaatcataaaggaaccataagttgttattactgctattgttgttggtttgctactgctgctc |
42383727 |
T |
|
| Q |
234 |
taaatgggagtcataacat-aaagttttttcaatcagattttgggtcattttcttcatggtaaacggatgaaagagccaaatgtagccgagtttatatta |
332 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42383726 |
taaatgggagtcataacataaaagttttttcaatcagattttgggtcattttcttcatggtaaacggatgaaagagccaaatgtagccgagtttatatta |
42383627 |
T |
|
| Q |
333 |
gcactagctggtgtaggcnnnnnnnnnnnnntggttatggcatgtgctacttcagcaggctctaccacactagctttagttgttgttgttaatcaaatta |
432 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
42383626 |
gcactagctggtgtaagc-aaaaaaaaaaaatggttatggcatgtgctacttcagcaggctctaccacactagctttagttgttgctgttaatcaaatta |
42383528 |
T |
|
| Q |
433 |
gtggtggctaagtcatttgcattgtcgcaaaccatgaagatctaagggcctaattcaatttcatggttggaaaagatcaaataccaatgttagaccaata |
532 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
42383527 |
gtggtggctaagtcatttgcattgtcgtaaaccatgaagatctaagggcctaattcaatttcatggttggaaaagaacaaataccaatgttagaccaata |
42383428 |
T |
|
| Q |
533 |
tgaatgagcannnnnnnngcaaattgactgtaatcttaagagtttgacaaattaaattattgtttttgtactgcctttgctt |
614 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42383427 |
tgaatgagcattttttttgcaaattgactgtaatcttaagagtttgacaaattaaattattgtttttgtactgcctttgctt |
42383346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 84932 - 84872
Alignment:
| Q |
124 |
cctattctatattatgattttttccaaatttgctaggaaacctacatcaaatcataaagga |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
84932 |
cctattctatattatgattttttccaaatttgctaggaaacctacatcaaatcataaagga |
84872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 281 - 438
Target Start/End: Complemental strand, 21989083 - 21988926
Alignment:
| Q |
281 |
ttttcttcatggtaaacggatgaaagagccaaatgtagccgagtttatattagcactagctggtgtaggcnnnnnnnnnnnnntggttatggcatgtgct |
380 |
Q |
| |
|
||||||||||||| | |||| |||||| |||||||||| ||||||||| |||||||||||||| | | |||||||||||| |||| |
|
|
| T |
21989083 |
ttttcttcatggtggaaggatcaaagagtcaaatgtagctaagtttatatcagcactagctggtggaaactaagaaaaactgatggttatggcatatgct |
21988984 |
T |
|
| Q |
381 |
acttcagcaggctctaccacactagctttagttgttgttgttaatcaaattagtggtg |
438 |
Q |
| |
|
|||||||| | | |||| |||||| ||||||||| |||||||||||||| | |||||| |
|
|
| T |
21988983 |
acttcagcggacactacgacactaactttagttgctgttgttaatcaaactggtggtg |
21988926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 451
Target Start/End: Complemental strand, 8944222 - 8944167
Alignment:
| Q |
399 |
acactagctttagttgttgttgttaatcaaattagtgg---tggctaagtcatttg |
451 |
Q |
| |
|
||||||||||| |||| |||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
8944222 |
acactagcttttgttgctgttgttaatcaaattggtggtgatggctaagtcatttg |
8944167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 451
Target Start/End: Original strand, 26887437 - 26887492
Alignment:
| Q |
399 |
acactagctttagttgttgttgttaatcaaattagtgg---tggctaagtcatttg |
451 |
Q |
| |
|
||||||||||| |||| |||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
26887437 |
acactagcttttgttgctgttgttaatcaaattggtggtgatggctaagtcatttg |
26887492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University