View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20924_low_4 (Length: 427)
Name: NF20924_low_4
Description: NF20924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20924_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 107; Significance: 2e-53; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 254 - 406
Target Start/End: Complemental strand, 14855110 - 14854965
Alignment:
| Q |
254 |
caagaaacaaggaaaacaaaaagaaaatacctcctcgacaagccggataggagcggctgactcgccacaacaccccagctgaggacctgaacccacaacc |
353 |
Q |
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| T |
14855110 |
caagaaacaaggaaaacaaaaagaaaacacctcctcgacaagccggataggagcggctgactcgccacaacaccccagctgaggacctgaacccacaa-- |
14855013 |
T |
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| Q |
354 |
cacaacccaaacaccctactagaactagcacaggacatgttacaccttccaat |
406 |
Q |
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| T |
14855012 |
-----cccaaacaccctaccaaaactagcacaggacatgttacgcctcccaat |
14854965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 103 - 257
Target Start/End: Complemental strand, 14855396 - 14855242
Alignment:
| Q |
103 |
attaacgtatgaaaagtaacatatttcacatttagtaatttcttgatgataatgaaactattaagatgcatggtttatacttttgtttctaacatctagc |
202 |
Q |
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| T |
14855396 |
attaacgtatgaaaagtaacatatttcacatttagtaatttcttgatgatattgaaactattaagatgcatggtttatacttttgtttctaacatctagc |
14855297 |
T |
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| Q |
203 |
tgttca-nnnnnnnnaatggcaaagtaataatatatataaacaaggagggatcaag |
257 |
Q |
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| T |
14855296 |
tattcatttttttttaatggtaaagtaataatatatataaacaa-gagggatcaag |
14855242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 37 - 200
Target Start/End: Original strand, 19969176 - 19969353
Alignment:
| Q |
37 |
atctttatttttatctaaaataggaattttgattattttggacctcaatttattccggttatcatgattaacgtatgaaaagtaacatatttcacattta |
136 |
Q |
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| T |
19969176 |
atctttatttttatctaaaatagaaattttgattattttggacctcaatttattctggttatcatgattaacttgtg-aaagtaacatatttcacattta |
19969274 |
T |
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| Q |
137 |
gtaatttcttgatgata---------------atgaaactattaagatgcatggtttatacttttgtttctaacatcta |
200 |
Q |
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| T |
19969275 |
gtagttccttgatgatattgcagatttaatggatgaaactgttaagttgcatggtttatacttttgtttctaacatcta |
19969353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 44 - 200
Target Start/End: Complemental strand, 19742527 - 19742357
Alignment:
| Q |
44 |
tttttatctaaaataggaattttgattattttggacctcaatttattccggttatcatgattaacgtatgaaaagtaacatatttcacatttagtaattt |
143 |
Q |
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| T |
19742527 |
tttttatctaaaatagaaattttgattattttgaacctcaatttattctggttataatgattaacttatg-aaagtaacatatttcacatttagtacttc |
19742429 |
T |
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| Q |
144 |
cttgatgata---------------atgaaactattaagatgcatggtttatacttttgtttctaacatcta |
200 |
Q |
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| T |
19742428 |
cttgatgatattgcagatttaatggatgaaactattaagttgcatggtttatacttttgtttctaacatcta |
19742357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 98 - 153
Target Start/End: Original strand, 38718497 - 38718552
Alignment:
| Q |
98 |
tcatgattaacgtatgaaaagtaacatatttcacatttagtaatttcttgatgata |
153 |
Q |
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| T |
38718497 |
tcatgattaacttatgaaaaataacatattacacatttagtaattccttgatgata |
38718552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 355
Target Start/End: Original strand, 33729885 - 33729985
Alignment:
| Q |
255 |
aagaaacaaggaaaacaaaaagaaaatacctcctcgacaagccggataggagcggctgactcgccacaacaccccagctgaggacctgaacccacaaccc |
354 |
Q |
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| T |
33729885 |
aagaaataagcaaaactaaaagaaaacacctcctcgaaaaactggacaggagcggttggcacaccacaacaccccagctaagggtctgaacccactaccc |
33729984 |
T |
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| Q |
355 |
a |
355 |
Q |
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| T |
33729985 |
a |
33729985 |
T |
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