View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20924_low_8 (Length: 346)
Name: NF20924_low_8
Description: NF20924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20924_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 338
Target Start/End: Original strand, 55330041 - 55330387
Alignment:
| Q |
11 |
aatattgaactaaatgcgtggatataaatggtggatgatctagtagcaggtagctatgatactacattataatttgtggttgggtctaatacaacctcac |
110 |
Q |
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| T |
55330041 |
aatattgaactaaatgcgtggatataaatggtggatgatctagtaacaggtagctatgatactacgttataatttatggttggacttaatacaacctcac |
55330140 |
T |
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| Q |
111 |
agaaccgaattgtggtaa---------------atgaacacttg----tttaagctatctcccaaccaatgtgatactcttttaccatcgagtttttcac |
191 |
Q |
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| T |
55330141 |
aaaaccgacttatggtaagaattgagcacactcataaacacttgcttgtttaagctatctcccaaccaatatgatactcttttaacatcgagtttttcac |
55330240 |
T |
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| Q |
192 |
gaatcctcattggataccgttacaaaattttcattttttggcaatacatctccactaaactcaatattttgttacataaattataaaataaacatctgta |
291 |
Q |
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| T |
55330241 |
gaatcctcgttggataccgttacaaaattttcattttttggcaatacatctccactaaactcaatattttgttacataaattataaaataaacatctgta |
55330340 |
T |
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| Q |
292 |
cacaaagaataggaaaaaatgttttcacatataattaaaaaatgaat |
338 |
Q |
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| T |
55330341 |
cacaaagaataggaaaacatgttttcacatataattaaaaaatgaat |
55330387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 117
Target Start/End: Complemental strand, 11234299 - 11234259
Alignment:
| Q |
77 |
ttataatttgtggttgggtctaatacaacctcacagaaccg |
117 |
Q |
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| T |
11234299 |
ttataatttgtggttgggcctaatacaaccccacaaaaccg |
11234259 |
T |
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