View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20924_low_9 (Length: 327)
Name: NF20924_low_9
Description: NF20924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20924_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 12 - 306
Target Start/End: Original strand, 33120722 - 33121016
Alignment:
| Q |
12 |
agatgaatatgcaatattatttaattaaacttacgattcagtgatgaggcaatctaactgagtaacaattgcagcaatagtgatgatggtccagtaaaca |
111 |
Q |
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| T |
33120722 |
agatgaataaacgatattaattaataaaacttacgattcagtgatgaggcaatctaactgagtaacaattgcagcaatagtgatgatggtccagtaaaca |
33120821 |
T |
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| Q |
112 |
tcaacaggaatttgttcatatgcaagttccaaagcaggaacaacctttgtgtcatacctatcattaaggtaatccaattcaagtataaattcaatcactt |
211 |
Q |
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| T |
33120822 |
tcaacaggaatttgttcatatgcaagttccaaagcaggaacgacctttgtgtcatacctatcattaaggtaatccaattcaagtataaattcaatcactt |
33120921 |
T |
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| Q |
212 |
gcaacgtgattttcaccaaactattaagctcggtgatggcttgacgatgtttttgaattgctgcaggctttgctaggatcggaactcgtttcagc |
306 |
Q |
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| T |
33120922 |
gcaacgtgattttcaccaaactattaagctcggtgatagcttgacggtgtttttgaattgctgcaggctttgctaggatcggaactcgtttcagc |
33121016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 128
Target Start/End: Complemental strand, 33139440 - 33139345
Alignment:
| Q |
33 |
taattaaacttacgattcagtgatgaggcaatctaactgagtaacaattgcagcaatagtgatgatggtccagtaaacatcaacaggaatttgttc |
128 |
Q |
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||||||||||||||| | |||| |||| || || |||||||||||||||||| |||| |||||||| ||| || ||||||||||| | |||||| |
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| T |
33139440 |
taattaaacttacgaattagtggtgagacattcaaactgagtaacaattgcaacaatggtgatgataacccaatatacatcaacagggaattgttc |
33139345 |
T |
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