View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20925_high_1 (Length: 548)
Name: NF20925_high_1
Description: NF20925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20925_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 1 - 530
Target Start/End: Complemental strand, 38920004 - 38919475
Alignment:
| Q |
1 |
taccacccccatccttacaatcaacaaacacaaccaaattcttaaaattcaaagcagttgaaccaacccaaataggtttcccccaaccaaaatcagcatc |
100 |
Q |
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| T |
38920004 |
taccacccccatccttacaatcaacaaacacaaccaaattcttaaaattcaaagcagttgaaccaacccaaataggtttcccccaaccaaaatcagcatc |
38919905 |
T |
|
| Q |
101 |
atacaaaggaaacctacacaaactggtaaaattaaacacaaccaattcctccttcacaatcactctatcaaaactttccttaagaaattccaaatgctcc |
200 |
Q |
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| T |
38919904 |
atacaaaggaaacctacacaaactggtaaaattaaacacaaccaattcctccttcacaatcactctatcaaaactttccttaagaaattccaaatgctcc |
38919805 |
T |
|
| Q |
201 |
ttaccttcttgaaccttcttcacatattctttatcaatcttctttatctcatctctcacttgcttcgctaacccgtaacactcttctccactattcatct |
300 |
Q |
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| T |
38919804 |
ttaccttcttgaaccttcttcacatattctttatcaatcttctttatctcatctctcacttgcttcgctaacccgtaacactcttctccactattcatct |
38919705 |
T |
|
| Q |
301 |
tcggaatcgttattgtaaatcgcaaatagttaccaaacgattctaaaggtaatgatggttccattttttggcgcaaattcaccgcatgaaccacaccata |
400 |
Q |
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| T |
38919704 |
tcggaatcgttattgtaaatcgcaaatagttaccaaacgattctaaaggtaatggtggttccattttttggcgcaaattcaccgcatgaaccacaccata |
38919605 |
T |
|
| Q |
401 |
gtttctttgcacaccatcattataaataacatcaacataacgactccaaataaaagccgataaagcctcaacgcgtgtaggattaaaattaatatatttt |
500 |
Q |
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| T |
38919604 |
gtttctttgcacaccatcattataaataacatcaacataacgactccaaataaaagccgataaagcctcaacgcgtgtaggattaaaattaatatatttt |
38919505 |
T |
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| Q |
501 |
gctcttagattttcaaccacgtcagcatta |
530 |
Q |
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| T |
38919504 |
gctcttagattttcaaccacgtcagcatta |
38919475 |
T |
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