View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20925_high_10 (Length: 288)

Name: NF20925_high_10
Description: NF20925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20925_high_10
NF20925_high_10
[»] scaffold0305 (1 HSPs)
scaffold0305 (128-279)||(10671-10822)
[»] scaffold0357 (1 HSPs)
scaffold0357 (120-279)||(14538-14697)
[»] chr4 (11 HSPs)
chr4 (120-279)||(12132538-12132697)
chr4 (146-279)||(13247629-13247762)
chr4 (144-279)||(15293310-15293445)
chr4 (144-279)||(16445365-16445500)
chr4 (147-279)||(55375514-55375646)
chr4 (144-279)||(14997300-14997435)
chr4 (146-279)||(9290819-9290952)
chr4 (120-279)||(16685238-16685397)
chr4 (196-279)||(37955996-37956078)
chr4 (207-278)||(12343052-12343123)
chr4 (24-121)||(20597262-20597359)
[»] scaffold0610 (1 HSPs)
scaffold0610 (120-279)||(9023-9182)
[»] scaffold0004 (1 HSPs)
scaffold0004 (128-279)||(370280-370430)
[»] chr6 (16 HSPs)
chr6 (144-279)||(14129308-14129443)
chr6 (144-279)||(15078662-15078797)
chr6 (144-279)||(25655331-25655466)
chr6 (144-279)||(23996096-23996231)
chr6 (144-279)||(16233057-16233192)
chr6 (120-277)||(17813573-17813735)
chr6 (146-275)||(18838208-18838337)
chr6 (144-279)||(1649082-1649217)
chr6 (120-279)||(18571499-18571658)
chr6 (144-269)||(16097909-16098033)
chr6 (151-279)||(23124035-23124163)
chr6 (144-279)||(16382671-16382806)
chr6 (144-279)||(25743385-25743520)
chr6 (174-274)||(21413331-21413431)
chr6 (60-122)||(22524249-22524311)
chr6 (65-122)||(19978946-19979003)
[»] chr2 (11 HSPs)
chr2 (120-279)||(24570337-24570496)
chr2 (128-279)||(28144578-28144729)
chr2 (137-279)||(25128262-25128404)
chr2 (144-279)||(22762262-22762397)
chr2 (144-279)||(12640612-12640747)
chr2 (144-279)||(22275894-22276029)
chr2 (144-279)||(23817786-23817921)
chr2 (144-279)||(24831880-24832015)
chr2 (56-119)||(20509792-20509855)
chr2 (56-122)||(34898271-34898337)
chr2 (120-225)||(21908960-21909065)
[»] chr7 (17 HSPs)
chr7 (137-279)||(45146529-45146671)
chr7 (143-279)||(21674694-21674830)
chr7 (128-279)||(12193529-12193680)
chr7 (144-279)||(14936320-14936455)
chr7 (129-279)||(17923653-17923803)
chr7 (120-272)||(23641497-23641649)
chr7 (144-279)||(15363913-15364048)
chr7 (143-278)||(4439902-4440037)
chr7 (144-279)||(13378671-13378806)
chr7 (127-274)||(17145403-17145550)
chr7 (144-279)||(7823873-7824008)
chr7 (144-279)||(27107936-27108071)
chr7 (137-279)||(13353124-13353266)
chr7 (146-278)||(12368740-12368871)
chr7 (57-122)||(11775501-11775567)
chr7 (58-122)||(26008576-26008640)
chr7 (207-279)||(20466755-20466827)
[»] scaffold0017 (1 HSPs)
scaffold0017 (137-270)||(13984-14117)
[»] chr3 (16 HSPs)
chr3 (143-275)||(6712791-6712923)
chr3 (144-279)||(8274791-8274926)
chr3 (24-122)||(4655864-4655963)
chr3 (128-279)||(18748283-18748429)
chr3 (144-279)||(13975437-13975572)
chr3 (144-279)||(15576363-15576498)
chr3 (144-278)||(16743095-16743229)
chr3 (151-279)||(17192707-17192835)
chr3 (175-278)||(267681-267784)
chr3 (56-122)||(15956968-15957034)
chr3 (120-197)||(21686640-21686717)
chr3 (144-279)||(6153231-6153366)
chr3 (56-122)||(15046669-15046735)
chr3 (59-124)||(38278220-38278285)
chr3 (228-279)||(21686588-21686639)
chr3 (86-122)||(3294635-3294671)
[»] scaffold0066 (1 HSPs)
scaffold0066 (128-279)||(46169-46320)
[»] scaffold0551 (1 HSPs)
scaffold0551 (120-279)||(8110-8269)
[»] scaffold0077 (2 HSPs)
scaffold0077 (120-279)||(28398-28557)
scaffold0077 (54-118)||(29709-29773)
[»] scaffold0507 (1 HSPs)
scaffold0507 (144-276)||(489-621)
[»] scaffold0008 (2 HSPs)
scaffold0008 (120-276)||(231576-231732)
scaffold0008 (144-279)||(23895-24030)
[»] scaffold0554 (1 HSPs)
scaffold0554 (144-279)||(3174-3309)
[»] scaffold0132 (2 HSPs)
scaffold0132 (144-279)||(14672-14807)
scaffold0132 (128-279)||(43553-43704)
[»] chr1 (8 HSPs)
chr1 (144-279)||(22142266-22142401)
chr1 (144-279)||(46518720-46518855)
chr1 (130-279)||(21202498-21202647)
chr1 (144-279)||(20914209-20914344)
chr1 (144-279)||(20831617-20831752)
chr1 (144-225)||(20184234-20184315)
chr1 (61-122)||(22613871-22613932)
chr1 (56-122)||(20406656-20406722)
[»] chr8 (10 HSPs)
chr8 (144-278)||(16877691-16877825)
chr8 (120-279)||(20652905-20653064)
chr8 (148-279)||(21197102-21197233)
chr8 (144-279)||(21850933-21851068)
chr8 (144-271)||(22315249-22315376)
chr8 (144-279)||(22982486-22982621)
chr8 (196-279)||(23150998-23151081)
chr8 (120-279)||(25282180-25282340)
chr8 (143-274)||(24818211-24818342)
chr8 (143-260)||(24094211-24094328)
[»] scaffold1710 (1 HSPs)
scaffold1710 (144-279)||(1066-1201)
[»] scaffold0808 (1 HSPs)
scaffold0808 (144-279)||(1210-1345)
[»] scaffold0109 (1 HSPs)
scaffold0109 (144-279)||(44602-44737)
[»] scaffold0589 (1 HSPs)
scaffold0589 (120-278)||(9003-9161)
[»] chr5 (8 HSPs)
chr5 (144-278)||(24581110-24581244)
chr5 (144-279)||(11211029-11211164)
chr5 (144-279)||(21937523-21937658)
chr5 (120-279)||(23503341-23503500)
chr5 (144-279)||(27010983-27011117)
chr5 (125-277)||(24516460-24516611)
chr5 (57-122)||(22447265-22447330)
chr5 (86-122)||(17362790-17362826)
[»] scaffold0028 (1 HSPs)
scaffold0028 (162-279)||(106747-106864)
[»] scaffold0692 (1 HSPs)
scaffold0692 (144-279)||(4031-4166)
[»] scaffold0225 (1 HSPs)
scaffold0225 (144-279)||(23409-23544)
[»] scaffold0037 (2 HSPs)
scaffold0037 (144-279)||(98030-98165)
scaffold0037 (144-279)||(23622-23757)
[»] scaffold0021 (2 HSPs)
scaffold0021 (144-279)||(13266-13401)
scaffold0021 (144-271)||(6333-6460)
[»] scaffold0001 (1 HSPs)
scaffold0001 (144-279)||(78785-78920)
[»] scaffold0761 (1 HSPs)
scaffold0761 (144-279)||(542-677)
[»] scaffold0012 (1 HSPs)
scaffold0012 (144-279)||(33151-33285)
[»] scaffold0011 (1 HSPs)
scaffold0011 (144-279)||(122106-122241)
[»] scaffold0310 (2 HSPs)
scaffold0310 (144-266)||(14893-15014)
scaffold0310 (199-279)||(5371-5451)
[»] scaffold0447 (2 HSPs)
scaffold0447 (144-269)||(5766-5891)
scaffold0447 (144-269)||(10380-10505)
[»] scaffold0383 (1 HSPs)
scaffold0383 (144-269)||(8375-8500)
[»] scaffold0076 (1 HSPs)
scaffold0076 (144-279)||(40273-40408)
[»] scaffold0387 (1 HSPs)
scaffold0387 (144-278)||(14146-14280)
[»] scaffold0615 (1 HSPs)
scaffold0615 (162-279)||(5201-5318)
[»] scaffold0117 (1 HSPs)
scaffold0117 (146-279)||(10467-10600)
[»] scaffold0058 (1 HSPs)
scaffold0058 (128-279)||(73916-74066)
[»] scaffold0160 (1 HSPs)
scaffold0160 (215-279)||(1201-1265)
[»] scaffold0218 (1 HSPs)
scaffold0218 (144-279)||(4100-4235)
[»] scaffold2073 (1 HSPs)
scaffold2073 (56-122)||(373-439)
[»] scaffold0234 (1 HSPs)
scaffold0234 (144-278)||(16327-16460)
[»] scaffold0162 (1 HSPs)
scaffold0162 (215-279)||(12923-12987)
[»] scaffold0018 (2 HSPs)
scaffold0018 (56-120)||(53149-53213)
scaffold0018 (56-120)||(57101-57165)
[»] scaffold0124 (1 HSPs)
scaffold0124 (144-278)||(7966-8101)
[»] scaffold0050 (1 HSPs)
scaffold0050 (228-279)||(78364-78415)
[»] scaffold0120 (1 HSPs)
scaffold0120 (120-279)||(22716-22868)
[»] scaffold1068 (1 HSPs)
scaffold1068 (228-279)||(1007-1058)


Alignment Details
Target: scaffold0305 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: scaffold0305
Description:

Target: scaffold0305; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 128 - 279
Target Start/End: Complemental strand, 10822 - 10671
Alignment:
Q  128 tgtaaccgttgttgtacgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcg 227  Q
    |||||||| ||||| ||||||||| |||||| | |||||||| || ||||||||||| | |||||||||||||||||||||||||| ||||||||||  |    
T  10822 tgtaaccggtgttggacgtgctttcaagtgttagaagttgacacctcgttttgttgggccgtttgagattgttgagaaggttggagttgtagcgtatcgg 10723  T
Q  228 attgcgttaccaccgtcattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  10722 attgtgttaccaccgtctttgtcgaatcttcatgatgtgtttcatgtgtctc 10671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0357 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0357
Description:

Target: scaffold0357; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 120 - 279
Target Start/End: Complemental strand, 14697 - 14538
Alignment:
Q  120 gtgattcatgtaaccgttgttgtacgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtag 219  Q
    |||| |||||| || | ||||| |||||||||||||||||  |||||||| || ||||||||||||| ||||||| || ||||||||||||| | |||||    
T  14697 gtgaatcatgtgactggtgttggacgtgctttgaagtgtcggaagttgactcctcgttttgttggaccgtttgaggttattgagaaggttggggttgtag 14598  T
Q  220 cgtattcgattgcgttaccaccgtcattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    |||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  14597 cgtatcggattgcgttaccaccgtctttgtcgaatcttcatgatgtgtttcatgtgtctc 14538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 120 - 279
Target Start/End: Original strand, 12132538 - 12132697
Alignment:
Q  120 gtgattcatgtaaccgttgttgtacgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtag 219  Q
    |||| |||||| || | ||||| ||||||||||||||||| ||||||||| || ||||||||||||| ||| |||||| | ||||||||||| | |||||    
T  12132538 gtgaatcatgtgactggtgttggacgtgctttgaagtgtcgaaagttgactcctcgttttgttggaccgttggagattatggagaaggttggggttgtag 12132637  T
Q  220 cgtattcgattgcgttaccaccgtcattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    |||||  |||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  12132638 cgtatcggattgcgttaccaccgtctttgtcgaatcctcatgatgtgtttcatgtgtctc 12132697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 146 - 279
Target Start/End: Complemental strand, 13247762 - 13247629
Alignment:
Q  146 tgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgtca 245  Q
    |||||||||||||   |||||||| || ||||||||||||| ||||||  || ||||||||||||| | ||||||||||  ||||||||||||||||||     
T  13247762 tgctttgaagtgtaggaagttgactcctcgttttgttggaccgtttgatgttattgagaaggttggggttgtagcgtatcggattgcgttaccaccgtct 13247663  T
Q  246 ttgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    ||||||||||||||| ||||||||||||||||||    
T  13247662 ttgtcgaatcttcataatgtgtttcatgtgtctc 13247629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 144 - 279
Target Start/End: Original strand, 15293310 - 15293445
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||||||||||||||   |||||||| || ||||||||||||| ||||||  |  ||||||||||||| | ||||||||||  |||||||||||||||||    
T  15293310 cgtgctttgaagtgtaggaagttgactcctcgttttgttggaccgtttgatgtcattgagaaggttggggttgtagcgtatcggattgcgttaccaccgt 15293409  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | ||||||||||||||| ||||||||||||||||||    
T  15293410 ctttgtcgaatcttcataatgtgtttcatgtgtctc 15293445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 144 - 279
Target Start/End: Original strand, 16445365 - 16445500
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||||||||||||||   |||||||| || ||||||||||||| ||||||  |  ||||||||||||| | ||||||||||  |||||||||||||||||    
T  16445365 cgtgctttgaagtgtaggaagttgactcctcgttttgttggaccgtttgatgtcattgagaaggttggggttgtagcgtatcggattgcgttaccaccgt 16445464  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | ||||||||||||||| ||||||||||||||||||    
T  16445465 ctttgtcgaatcttcataatgtgtttcatgtgtctc 16445500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 147 - 279
Target Start/End: Original strand, 55375514 - 55375646
Alignment:
Q  147 gctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgtcat 246  Q
    ||||||||||||   ||||||||  | ||||||||||||| ||||||  || ||||||||||||| | ||||||||||  |||||||||||||||||| |    
T  55375514 gctttgaagtgtatgaagttgacttctcgttttgttggaccgtttgatgttattgagaaggttggggttgtagcgtatcggattgcgttaccaccgtctt 55375613  T
Q  247 tgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    |||||||||||||| ||||||||||||||||||    
T  55375614 tgtcgaatcttcataatgtgtttcatgtgtctc 55375646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 144 - 279
Target Start/End: Complemental strand, 14997435 - 14997300
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||||||||||||||   |||||||| || ||||||||||||| ||||||  |  ||||||||||||| | ||||||||||  |||||| ||||||||||    
T  14997435 cgtgctttgaagtgtaggaagttgactcctcgttttgttggaccgtttgatgtcattgagaaggttggggttgtagcgtatcggattgcattaccaccgt 14997336  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | ||||||||||||||| ||||| ||||||||||||    
T  14997335 ctttgtcgaatcttcataatgtgcttcatgtgtctc 14997300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 146 - 279
Target Start/End: Complemental strand, 9290952 - 9290819
Alignment:
Q  146 tgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgtca 245  Q
    |||||||||||||   |||||||| || ||||| ||||||| ||||||  || ||||||||||||| | ||||||||||   |||||||||||||| ||     
T  9290952 tgctttgaagtgtaggaagttgactcctcgtttcgttggaccgtttgatgttattgagaaggttggggttgtagcgtatcaaattgcgttaccaccatct 9290853  T
Q  246 ttgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    |||| |||||||||| ||||||||||||||||||    
T  9290852 ttgtagaatcttcataatgtgtttcatgtgtctc 9290819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 120 - 279
Target Start/End: Complemental strand, 16685397 - 16685238
Alignment:
Q  120 gtgattcatgtaaccgttgttgtacgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtag 219  Q
    |||| ||||||||||| |||||   ||||||||||||||   |||||||| |||||||||||||| | |||||||||| | |||||||||| |||| ||     
T  16685397 gtgaatcatgtaaccggtgttgggtgtgctttgaagtgttggaagttgacaccgcgttttgttgggccgtttgagattatagagaaggttgaagctatat 16685298  T
Q  220 cgtattcgattgcgttaccaccgtcattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
     ||||  || ||||||||| ||||| | || ||||||||||||||||||| |||| ||||    
T  16685297 tgtatcagactgcgttaccgccgtcgtcgttgaatcttcatgatgtgttttatgtatctc 16685238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 196 - 279
Target Start/End: Original strand, 37955996 - 37956078
Alignment:
Q  196 ttgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgtcattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    |||||||||||||||| | ||||||||||  |||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  37955996 ttgttgagaaggttgg-gttgtagcgtatcggattgcgttaccaccgtctttgtcgaatcttcatgatgtgttttatgtgtctc 37956078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 207 - 278
Target Start/End: Original strand, 12343052 - 12343123
Alignment:
Q  207 gttggagctgtagcgtattcgattgcgttaccaccgtcattgtcgaatcttcatgatgtgtttcatgtgtct 278  Q
    |||||||| |||||||||   ||||||||||||||||| ||||| |||||||| ||||||||||||||||||    
T  12343052 gttggagccgtagcgtatcgaattgcgttaccaccgtctttgtcaaatcttcaagatgtgtttcatgtgtct 12343123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 20597359 - 20597262
Alignment:
Q  24 acatattcaaataattcacatgattcaccgatgcacataagcaagtatgacatctgtcaagttatgcaatgcgcctatacactac-tctatatgcatgt 121  Q
    |||||||||| |||||||||||||||||| | | ||||||| || ||||||   |||||| | ||||||||||||||||||| || |||||||||||||    
T  20597359 acatattcaactaattcacatgattcacc-aagtacataagaaattatgactcatgtcaaatcatgcaatgcgcctatacacgacttctatatgcatgt 20597262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0610 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: scaffold0610
Description:

Target: scaffold0610; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 120 - 279
Target Start/End: Original strand, 9023 - 9182
Alignment:
Q  120 gtgattcatgtaaccgttgttgtacgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtag 219  Q
    |||| |||||| |||| |||||  ||||||||||||||||  |||||||| || ||||||||||||| ||||||| || ||||||||||||| | |||||    
T  9023 gtgaatcatgtcaccggtgttggtcgtgctttgaagtgtcggaagttgactcctcgttttgttggaccgtttgaggttattgagaaggttggggttgtag 9122  T
Q  220 cgtattcgattgcgttaccaccgtcattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
     ||||  |||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  9123 tgtatcggattgcgttaccaccgtctttgtcgaatcttcatgatgtgtttcatgtatctc 9182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 128 - 279
Target Start/End: Original strand, 370280 - 370430
Alignment:
Q  128 tgtaaccgttgttgtacgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcg 227  Q
    |||||||| ||||| | | ||||||||||||   |||||||| ||||||||||||||||  |||||||||||||| |||||||||| ||||||||||| |    
T  370280 tgtaaccggtgttggatgagctttgaagtgttggaagttgacaccgcgttttgttggaccatttgagattgttgataaggttggagttgtagcgtattgg 370379  T
Q  228 attgcgttaccaccgtcattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    |||| |||||| ||||||||||||||||||||||||||||||||| ||||||    
T  370380 attgtgttacc-ccgtcattgtcgaatcttcatgatgtgtttcatttgtctc 370430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 6e-40; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 144 - 279
Target Start/End: Complemental strand, 14129443 - 14129308
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||||||||||||||| ||||||||| || ||||||||||||| ||||||  || ||||||||||||| | ||||||||||  |||||||||||||||||    
T  14129443 cgtgctttgaagtgtcgaaagttgactcctcgttttgttggaccgtttgatgttattgagaaggttggggttgtagcgtatcggattgcgttaccaccgt 14129344  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | |||| |||||||||||||||||||||||||||||    
T  14129343 ctttgttgaatcttcatgatgtgtttcatgtgtctc 14129308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 144 - 279
Target Start/End: Original strand, 15078662 - 15078797
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||||||||||||||   |||||||| || ||||||||||||| ||||||  |||||||||||||||| | ||||||||||  |||||||||||||||||    
T  15078662 cgtgctttgaagtgtaggaagttgactcctcgttttgttggaccgtttgatgttgttgagaaggttggggttgtagcgtatcagattgcgttaccaccgt 15078761  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | ||||| ||||||||||||||||||||||| ||||    
T  15078762 ctttgtcaaatcttcatgatgtgtttcatgtatctc 15078797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 144 - 279
Target Start/End: Complemental strand, 25655466 - 25655331
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    ||||||||||| ||||  ||||| || || |||||||||||||  ||||||||| ||||||||||||| | ||||||||||  |||||||||||||||||    
T  25655466 cgtgctttgaactgtcggaagttaactccccgttttgttggaccatttgagattattgagaaggttggggttgtagcgtatcggattgcgttaccaccgt 25655367  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | |||| |||||||||||||||||||||||||||||    
T  25655366 ctttgttgaatcttcatgatgtgtttcatgtgtctc 25655331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 144 - 279
Target Start/End: Complemental strand, 23996231 - 23996096
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||||||||||||||   |||||||| || ||||||||||||| ||||||  |  ||||||||||||| | ||||||||||  |||||||||||||||||    
T  23996231 cgtgctttgaagtgtaggaagttgactcctcgttttgttggaccgtttgatgtcattgagaaggttggggttgtagcgtatcggattgcgttaccaccgt 23996132  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | ||||||||||||||| ||||||||||||||||||    
T  23996131 ctttgtcgaatcttcataatgtgtttcatgtgtctc 23996096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 144 - 279
Target Start/End: Complemental strand, 16233192 - 16233057
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    ||||| |||||||||   |||||||| || ||||||||||||| ||||||  |  ||||||||||||| | ||||||||||  |||||||||||||||||    
T  16233192 cgtgcgttgaagtgtaggaagttgacacctcgttttgttggaccgtttgatgtcattgagaaggttggggttgtagcgtatcggattgcgttaccaccgt 16233093  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | ||||||||||||||| ||||||||||||||||||    
T  16233092 ctttgtcgaatcttcataatgtgtttcatgtgtctc 16233057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 120 - 277
Target Start/End: Complemental strand, 17813735 - 17813573
Alignment:
Q  120 gtgattcatgtaaccgttgttgtacgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgttt-----gagattgttgagaaggttggagc 214  Q
    |||| ||||||||||| ||||| |||  ||||||| ||||| ||||| || || |||||||||||||| |||     || |||||||||||||||||||     
T  17813735 gtgaatcatgtaaccggtgttggacgcactttgaaatgtcagaagttaacacctcgttttgttggactatttaatttgaaattgttgagaaggttggagt 17813636  T
Q  215 tgtagcgtattcgattgcgttaccaccgtcattgtcgaatcttcatgatgtgtttcatgtgtc 277  Q
     |||||||||  |||||| |||| |||||| ||||||||||||||||||||||||||||||||    
T  17813635 ggtagcgtatcggattgcattactaccgtcgttgtcgaatcttcatgatgtgtttcatgtgtc 17813573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 146 - 275
Target Start/End: Original strand, 18838208 - 18838337
Alignment:
Q  146 tgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgtca 245  Q
    |||||||||||||   |||||||| || ||||||||||||| ||||||  |  ||||||||||||| | ||||||||||  ||||||||||||||||||     
T  18838208 tgctttgaagtgtaggaagttgactcctcgttttgttggaccgtttgatgtcattgagaaggttggggttgtagcgtatcggattgcgttaccaccgtct 18838307  T
Q  246 ttgtcgaatcttcatgatgtgtttcatgtg 275  Q
    ||||||||||||||| ||||||||||||||    
T  18838308 ttgtcgaatcttcataatgtgtttcatgtg 18838337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 279
Target Start/End: Original strand, 1649082 - 1649217
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||||||||||||||   |||||||| || ||||||||||| | ||||||  |  ||||||||||||| | |||||||||   ||||||||| |||||||    
T  1649082 cgtgctttgaagtgtgggaagttgactcctcgttttgttgggccgtttgatgtgattgagaaggttggggttgtagcgtaccggattgcgttgccaccgt 1649181  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | ||||||||||||||| ||||||||||||||||||    
T  1649182 ctttgtcgaatcttcataatgtgtttcatgtgtctc 1649217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 120 - 279
Target Start/End: Complemental strand, 18571658 - 18571499
Alignment:
Q  120 gtgattcatgtaaccgttgttgtacgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtag 219  Q
    |||| |||||| |||| |||||  ||||||||||||| |   |||| ||| || ||||||||||||| ||||||  || ||||||||||||| | |||||    
T  18571658 gtgaatcatgtgaccgatgttggtcgtgctttgaagtataggaagtagactcctcgttttgttggaccgtttgatgttattgagaaggttggggttgtag 18571559  T
Q  220 cgtattcgattgcgttaccaccgtcattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    |||||  |||||||||||||||||| |||| |||||||||| |||| ||| |||||||||    
T  18571558 cgtatcggattgcgttaccaccgtctttgtagaatcttcataatgtatttaatgtgtctc 18571499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 144 - 269
Target Start/End: Complemental strand, 16098033 - 16097909
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||||||||||||||   |||||||| || ||||||||||||| ||||||  |  ||||||||||||| | ||||||||||  ||||| |||||||||||    
T  16098033 cgtgctttgaagtgtaggaagttgactcctcgttttgttggac-gtttgatgtgattgagaaggttggggttgtagcgtatcggattgtgttaccaccgt 16097935  T
Q  244 cattgtcgaatcttcatgatgtgttt 269  Q
    | ||||||||||||||||||||||||    
T  16097934 ctttgtcgaatcttcatgatgtgttt 16097909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 151 - 279
Target Start/End: Complemental strand, 23124163 - 23124035
Alignment:
Q  151 tgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgtcattgtc 250  Q
    |||||||| | |||||||| || ||||||||||||| ||||||||| || |||||||| |||| ||||||||||  |||||  ||||| ||||| || ||    
T  23124163 tgaagtgtaagaagttgacaccacgttttgttggaccgtttgagatagtagagaaggtgggagttgtagcgtatcggattgtattacctccgtcgttatc 23124064  T
Q  251 gaatcttcatgatgtgtttcatgtgtctc 279  Q
    |||||| ||||||||||||||||| ||||    
T  23124063 gaatctccatgatgtgtttcatgtatctc 23124035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 144 - 279
Target Start/End: Original strand, 16382671 - 16382806
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||||||| ||||||   |||||||| || ||||||||||| | ||||||  |  ||||||||||||| | |||||||||   ||||||||| |||||||    
T  16382671 cgtgctttaaagtgtaggaagttgactcctcgttttgttgggccgtttgatgtcattgagaaggttggggttgtagcgtaccggattgcgttgccaccgt 16382770  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | ||||||||||||||| ||||||||||||||||||    
T  16382771 ctttgtcgaatcttcataatgtgtttcatgtgtctc 16382806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 144 - 279
Target Start/End: Original strand, 25743385 - 25743520
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||||||||||||||   |||||||| || |||||||||| ||  |||||  || ||||||||||||| | |||||| |||  ||||||||||||||| |    
T  25743385 cgtgctttgaagtgtaggaagttgactcctcgttttgttgcaccatttgatgttattgagaaggttggggttgtagcatatcggattgcgttaccaccat 25743484  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | ||||||||||||||| || |||||||||||||||    
T  25743485 ctttgtcgaatcttcatcatatgtttcatgtgtctc 25743520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 174 - 274
Target Start/End: Original strand, 21413331 - 21413431
Alignment:
Q  174 cgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgtcattgtcgaatcttcatgatgtgtttcatg 273  Q
    ||||||||| ||| ||||||  |||||||||||||||| | ||||||||||   |||||||| ||||| |  ||||||||||||||||||||||||||||    
T  21413331 cgttttgttagaccgtttgatgttgttgagaaggttggggttgtagcgtatcgcattgcgttgccaccatatttgtcgaatcttcatgatgtgtttcatg 21413430  T
Q  274 t 274  Q
    |    
T  21413431 t 21413431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 122
Target Start/End: Complemental strand, 22524311 - 22524249
Alignment:
Q  60 ataagcaagtatgacatctgtcaagttatgcaatgcgcctatacactactctatatgcatgtg 122  Q
    |||||||||||| |||| ||| |||||||||||||| ||||||||| | ||||||||||||||    
T  22524311 ataagcaagtataacatttgttaagttatgcaatgcacctatacacaaatctatatgcatgtg 22524249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 122
Target Start/End: Original strand, 19978946 - 19979003
Alignment:
Q  65 caagtatgacatctgtcaagttatgcaatgcgcctatacactactctatatgcatgtg 122  Q
    ||||||| ||||  |||||||||||||||||| ||| |||| || |||||||||||||    
T  19978946 caagtataacattcgtcaagttatgcaatgcgtctagacacgacactatatgcatgtg 19979003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 6e-40; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 120 - 279
Target Start/End: Original strand, 24570337 - 24570496
Alignment:
Q  120 gtgattcatgtaaccgttgttgtacgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtag 219  Q
    |||| ||||||||| | |||||  |||||||||||||||   |||||||| || ||||||||||||| ||||||  |||||||||||||||| | |||||    
T  24570337 gtgaatcatgtaactggtgttggtcgtgctttgaagtgttggaagttgactcctcgttttgttggaccgtttgatgttgttgagaaggttggggttgtag 24570436  T
Q  220 cgtattcgattgcgttaccaccgtcattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    |||||| ||||||||||||||| || ||||||||||||||| ||||||||||||||||||    
T  24570437 cgtattggattgcgttaccaccatctttgtcgaatcttcataatgtgtttcatgtgtctc 24570496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 128 - 279
Target Start/End: Complemental strand, 28144729 - 28144578
Alignment:
Q  128 tgtaaccgttgttgtacgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcg 227  Q
    |||||||| ||||| ||||||||||||||||   ||||| || |  ||||||||||||| |||||||||| ||||||||||||| | ||||||||||  |    
T  28144729 tgtaaccggtgttggacgtgctttgaagtgtaggaagttaactcatcgttttgttggaccgtttgagattattgagaaggttggggttgtagcgtatcgg 28144630  T
Q  228 attgcgttaccaccgtcattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  28144629 attgcgttaccaccgtctttgtcgaatcttcatgatgtgtttcatgtttctc 28144578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 137 - 279
Target Start/End: Complemental strand, 25128404 - 25128262
Alignment:
Q  137 tgttgtacgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgtta 236  Q
    ||||| ||| |||||||| |||| |||||| || || | ||||||||||| |||||||||| ||||||||||||| | ||||||||||  ||||||||||    
T  25128404 tgttggacgcgctttgaattgtcgaaagtttactcctctttttgttggaccgtttgagattattgagaaggttggggttgtagcgtatcggattgcgtta 25128305  T
Q  237 ccaccgtcattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    |||||||| || |||||||||||||||||||||||||||||||    
T  25128304 ccaccgtctttatcgaatcttcatgatgtgtttcatgtgtctc 25128262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 144 - 279
Target Start/End: Original strand, 22762262 - 22762397
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||| ||||||||||| ||||||||| || | ||||| ||||| ||||||  |||||||||||||||| | ||||||||||  |||||||||||||||||    
T  22762262 cgtggtttgaagtgtcgaaagttgactcctcattttggtggaccgtttgatgttgttgagaaggttggggttgtagcgtatcggattgcgttaccaccgt 22762361  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | ||||| ||||||||||||||||||||||||||||    
T  22762362 ctttgtccaatcttcatgatgtgtttcatgtgtctc 22762397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 144 - 279
Target Start/End: Original strand, 12640612 - 12640747
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||||||||||||||   |||||||| || ||||||||||||| ||||||  |  ||||||||||||| | ||||||||||  |||||||||||||||||    
T  12640612 cgtgctttgaagtgtaggaagttgactcctcgttttgttggaccgtttgatgtcattgagaaggttggggttgtagcgtatcggattgcgttaccaccgt 12640711  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | ||||||||||||||| ||||||||||||||||||    
T  12640712 ctttgtcgaatcttcataatgtgtttcatgtgtctc 12640747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 144 - 279
Target Start/End: Complemental strand, 22276029 - 22275894
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||||||||||| ||   |||||||| || ||||||||||||| ||||||  || ||||||||||||| | ||||||||||  |||||||||||||||||    
T  22276029 cgtgctttgaagggtaggaagttgactcctcgttttgttggaccgtttgatgttattgagaaggttggggttgtagcgtatcggattgcgttaccaccgt 22275930  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | ||||||||||||||| ||||||||||||||||||    
T  22275929 ctttgtcgaatcttcataatgtgtttcatgtgtctc 22275894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 279
Target Start/End: Original strand, 23817786 - 23817921
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    ||||||||||||||||  |||||||| ||  ||||||| ||||  |||||| || ||||||||||||| | ||||||||||  |||||||||||||||      
T  23817786 cgtgctttgaagtgtcggaagttgactcctagttttgtaggaccatttgaggttattgagaaggttggggttgtagcgtatcggattgcgttaccaccaa 23817885  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | ||| ||||||||||| ||||||||||||||||||    
T  23817886 ctttgccgaatcttcataatgtgtttcatgtgtctc 23817921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 279
Target Start/End: Original strand, 24831880 - 24832015
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||||||||||||||   |||||||| || ||||||||||||| ||||||  |  || |||||||||| | |||||||||   ||||||||| |||||||    
T  24831880 cgtgctttgaagtgtaggaagttgactcctcgttttgttggaccgtttgatgtcattaagaaggttggggttgtagcgtaccggattgcgttgccaccgt 24831979  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | ||||||||||||||| ||||||||||||||||||    
T  24831980 ctttgtcgaatcttcataatgtgtttcatgtgtctc 24832015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 20509792 - 20509855
Alignment:
Q  56 gcacataagcaagtatgacatctgtcaagttatgcaatgcgcctatacactactctatatgcat 119  Q
    |||||||||||| ||| ||| |||||||||||||||||||||||| |||| |||||||||||||    
T  20509792 gcacataagcaattataacacctgtcaagttatgcaatgcgcctagacacgactctatatgcat 20509855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 34898337 - 34898271
Alignment:
Q  56 gcacataagcaagtatgacatctgtcaagttatgcaatgcgcctatacactactctatatgcatgtg 122  Q
    |||| ||||||||||||||| ||||||||||||||||| || ||| |||  ||||||||||||||||    
T  34898337 gcacgtaagcaagtatgacacctgtcaagttatgcaatacgtctagacatgactctatatgcatgtg 34898271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 225
Target Start/End: Original strand, 21908960 - 21909065
Alignment:
Q  120 gtgattcatgtaaccgttgttgtacgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtag 219  Q
    |||| ||| ||||| | ||||| ||||| ||||||||| |  |||||||| |||| |||||||||||  ||||||||| | ||||| || |||| |||||    
T  21908960 gtgaatcacgtaactggtgttggacgtgatttgaagtgccggaagttgacaccgcattttgttggaccatttgagattatagagaaagtcggagttgtag 21909059  T
Q  220 cgtatt 225  Q
    ||||||    
T  21909060 cgtatt 21909065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 137 - 279
Target Start/End: Complemental strand, 45146671 - 45146529
Alignment:
Q  137 tgttgtacgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgtta 236  Q
    ||||| ||||||||||||||||| ||||||||| || | ||||||||||| |||||||||| ||||||||||||| | | ||||||||  |||| | |||    
T  45146671 tgttggacgtgctttgaagtgtcgaaagttgactcctcattttgttggaccgtttgagattattgagaaggttggggttttagcgtatcggattacatta 45146572  T
Q  237 ccaccgtcattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  45146571 ccaccgtctttgtcgaatcttcatgatgtgtttcatgtgtctc 45146529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 143 - 279
Target Start/End: Original strand, 21674694 - 21674830
Alignment:
Q  143 acgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccg 242  Q
    |||||||||||||||| | || ||||| || |||||||||||||  ||||||||| ||||||||||||| | || |||||||  ||||||||||||||||    
T  21674694 acgtgctttgaagtgtaagaaattgactcctcgttttgttggaccttttgagattattgagaaggttggggttgcagcgtatcggattgcgttaccaccg 21674793  T
Q  243 tcattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    || ||||||||||||||||||||||||||||||||||    
T  21674794 tctttgtcgaatcttcatgatgtgtttcatgtgtctc 21674830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 128 - 279
Target Start/End: Complemental strand, 12193680 - 12193529
Alignment:
Q  128 tgtaaccgttgttgtacgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcg 227  Q
    |||||||| ||||| |||||||||||| || |  |||||||| || ||||||||||||| |||||||||||||||||||||||| | |||||| |||  |    
T  12193680 tgtaaccggtgttggacgtgctttgaaatgccggaagttgactcctcgttttgttggaccgtttgagattgttgagaaggttggggttgtagcatatcgg 12193581  T
Q  228 attgcgttaccaccgtcattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    ||| |||||||||  |  ||||||||||||||||||||||||||||||||||    
T  12193580 attacgttaccacgatatttgtcgaatcttcatgatgtgtttcatgtgtctc 12193529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 144 - 279
Target Start/End: Complemental strand, 14936455 - 14936320
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    ||||||||||||||||  |||||||| ||  ||||||| |||| ||||||| || ||||||||||||| | ||||||||||  |||||||||||||||||    
T  14936455 cgtgctttgaagtgtcggaagttgactccttgttttgtgggaccgtttgaggttattgagaaggttggggttgtagcgtatcggattgcgttaccaccgt 14936356  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | || |||||||||||||||||||||||||||||||    
T  14936355 ctttatcgaatcttcatgatgtgtttcatgtgtctc 14936320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 129 - 279
Target Start/End: Complemental strand, 17923803 - 17923653
Alignment:
Q  129 gtaaccgttgttgtacgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcga 228  Q
    ||||||| || || |||||||||||||||| | || ||||| || ||||||||||||| |||||||||| ||||||||||||| | || |||||||  ||    
T  17923803 gtaaccggtggtggacgtgctttgaagtgtaagaaattgactcctcgttttgttggaccgtttgagattattgagaaggttggggttgcagcgtatcgga 17923704  T
Q  229 ttgcgttaccaccgtcattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    |||||||||||||| | ||||||||| | ||||||||||||||||||||||    
T  17923703 ttgcgttaccaccgcctttgtcgaatttacatgatgtgtttcatgtgtctc 17923653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 120 - 272
Target Start/End: Complemental strand, 23641649 - 23641497
Alignment:
Q  120 gtgattcatgtaaccgttgttgtacgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtag 219  Q
    |||| |||| |||||| ||||| |||| |||| ||||||| ||||||||| | ||||||| |||||| |||||||||| | |||||||||||||||||||    
T  23641649 gtgaatcatataaccggtgttggacgttcttttaagtgtcgaaagttgacactgcgttttattggaccgtttgagattatagagaaggttggagctgtag 23641550  T
Q  220 cgtattcgattgcgttaccaccgtcattgtcgaatcttcatgatgtgtttcat 272  Q
    |||||  ||||||||| || || ||||||||||||||||||||| | ||||||    
T  23641549 cgtatcggattgcgttgccgccatcattgtcgaatcttcatgatttatttcat 23641497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 144 - 279
Target Start/End: Complemental strand, 15364048 - 15363913
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    ||||||||||||||||  |||||||| ||  ||||||| |||| ||||||| || ||||||||||||| | ||||||||||  |||||||||||||||||    
T  15364048 cgtgctttgaagtgtcggaagttgactccttgttttgtgggaccgtttgaggttattgagaaggttggggttgtagcgtatcggattgcgttaccaccgt 15363949  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | || | |||||||||||||||||||||||||||||    
T  15363948 ctttatagaatcttcatgatgtgtttcatgtgtctc 15363913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 143 - 278
Target Start/End: Complemental strand, 4440037 - 4439902
Alignment:
Q  143 acgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccg 242  Q
    ||||||||||||||||   |||||||| || |||||| ||||||  ||||||||| |||||||||||| || ||||||||||  ||||||||||||||||    
T  4440037 acgtgctttgaagtgtaggaagttgactcctcgttttattggaccatttgagattattgagaaggttgcagttgtagcgtatcagattgcgttaccaccg 4439938  T
Q  243 tcattgtcgaatcttcatgatgtgtttcatgtgtct 278  Q
    || ||||| ||| | |||||||||||||||||||||    
T  4439937 tctttgtcaaatttacatgatgtgtttcatgtgtct 4439902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 144 - 279
Target Start/End: Complemental strand, 13378806 - 13378671
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    ||||||||||| ||||  |||||||| ||  |||||||||||| ||||||  ||||||||| |||||| | ||||| ||||  |||| ||||||||||||    
T  13378806 cgtgctttgaattgtcggaagttgactccttgttttgttggaccgtttgatgttgttgagacggttggggttgtagtgtatcggatttcgttaccaccgt 13378707  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | ||||||||||||||||||||||||||||||||||    
T  13378706 ctttgtcgaatcttcatgatgtgtttcatgtgtctc 13378671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 127 - 274
Target Start/End: Original strand, 17145403 - 17145550
Alignment:
Q  127 atgtaaccgttgttgtacgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattc 226  Q
    ||||||||| ||||| ||||| |||| ||||||  |||||||| ||  ||||| |||||| |||||||||| || |||| ||||||| ||||||||||      
T  17145403 atgtaaccggtgttggacgtgttttggagtgtcggaagttgacaccctgttttattggaccgtttgagattatttagaatgttggagttgtagcgtatcg 17145502  T
Q  227 gattgcgttaccaccgtcattgtcgaatcttcatgatgtgtttcatgt 274  Q
    ||||| |||||| || || ||||| |||||||||||||||||||||||    
T  17145503 gattgtgttaccgccatcgttgtcaaatcttcatgatgtgtttcatgt 17145550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 144 - 279
Target Start/End: Complemental strand, 7824008 - 7823873
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||||||| ||||||   |||||||| || ||||||||||| | ||||||  |  ||||||||||||| | |||||||||   ||||||||| |||||||    
T  7824008 cgtgctttaaagtgtaggaagttgactcctcgttttgttgggccgtttgatgtcattgagaaggttggggttgtagcgtaccggattgcgttgccaccgt 7823909  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | ||||||||||||||| ||||||||||||||||||    
T  7823908 ctttgtcgaatcttcataatgtgtttcatgtgtctc 7823873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 144 - 279
Target Start/End: Original strand, 27107936 - 27108071
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||||||| ||||||   |||||||| || ||||||||||| | ||||||  |  ||||||||||||| | |||||||||   ||||||||| |||||||    
T  27107936 cgtgctttaaagtgtaggaagttgactcctcgttttgttgggccgtttgatgtcattgagaaggttggggttgtagcgtaccggattgcgttgccaccgt 27108035  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | ||||||||||||||| ||||||||||||||||||    
T  27108036 ctttgtcgaatcttcataatgtgtttcatgtgtctc 27108071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 279
Target Start/End: Complemental strand, 13353266 - 13353124
Alignment:
Q  137 tgttgtacgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgtta 236  Q
    ||||| ||||||||||||||||  ||||||||| || |||||||||||||  ||| || || ||||||||||||| | ||||| ||||  ||||||||||    
T  13353266 tgttggacgtgctttgaagtgttgaaagttgactcctcgttttgttggaccatttaagcttattgagaaggttggggttgtagtgtatcggattgcgtta 13353167  T
Q  237 ccaccgtcattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    |||||||| |||| |||  | ||||| |||||||| |||||||    
T  13353166 ccaccgtctttgttgaacttacatgacgtgtttcacgtgtctc 13353124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 146 - 278
Target Start/End: Original strand, 12368740 - 12368871
Alignment:
Q  146 tgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgtca 245  Q
    |||||||||||||   |||||||| || ||||| ||||||| ||||||  || |||| |||||||| | ||||||||||  |||| | || ||||||||     
T  12368740 tgctttgaagtgtaggaagttgactcctcgttt-gttggaccgtttgatgttattgataaggttggggttgtagcgtatcggattacattgccaccgtct 12368838  T
Q  246 ttgtcgaatcttcatgatgtgtttcatgtgtct 278  Q
    ||||| |||||||||||||||||||||||||||    
T  12368839 ttgtcaaatcttcatgatgtgtttcatgtgtct 12368871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 122
Target Start/End: Complemental strand, 11775567 - 11775501
Alignment:
Q  57 cacataagcaagtatgacatctgtcaagttatgcaatgcgcctat-acactactctatatgcatgtg 122  Q
    ||||||| ||||||||||| |||||||||||||||||| |||||| || | ||||||||||||||||    
T  11775567 cacataatcaagtatgacacctgtcaagttatgcaatgtgcctatgacccaactctatatgcatgtg 11775501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 122
Target Start/End: Complemental strand, 26008640 - 26008576
Alignment:
Q  58 acataagcaagtatgacatctgtcaagttatgcaatgcgcct-atacactactctatatgcatgtg 122  Q
    |||||||||||||||||| ||||||| ||||||||||||||| | |||| ||| ||||||||||||    
T  26008640 acataagcaagtatgacacctgtcaa-ttatgcaatgcgcctaagacacgactatatatgcatgtg 26008576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 279
Target Start/End: Complemental strand, 20466827 - 20466755
Alignment:
Q  207 gttggagctgtagcgtattcgattgcgttaccaccgtcattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    |||||||| ||||| |||  ||||||||||||||  || |||||||||||||||  ||||| |||||||||||    
T  20466827 gttggagcagtagcatatcagattgcgttaccactatcgttgtcgaatcttcatagtgtgtatcatgtgtctc 20466755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 137 - 270
Target Start/End: Complemental strand, 14117 - 13984
Alignment:
Q  137 tgttgtacgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgtta 236  Q
    ||||| ||||||||||||||||| ||||||||| || ||||||||||||| |||||||||| |||| |||||||| | | ||||||||  ||||||||||    
T  14117 tgttggacgtgctttgaagtgtcgaaagttgactcctcgttttgttggaccgtttgagattattgaaaaggttggggttatagcgtatcagattgcgtta 14018  T
Q  237 ccaccgtcattgtcgaatcttcatgatgtgtttc 270  Q
    |||||||| |||||||||||||||||||||||||    
T  14017 ccaccgtctttgtcgaatcttcatgatgtgtttc 13984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 143 - 275
Target Start/End: Original strand, 6712791 - 6712923
Alignment:
Q  143 acgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccg 242  Q
    |||||||||||||||||  |||||||| || ||||||||||| | |||||||||| ||||||||||||| | ||||||||||  ||||| ||||||||||    
T  6712791 acgtgctttgaagtgtcggaagttgactcctcgttttgttggtccgtttgagattattgagaaggttggggttgtagcgtatcagattgtgttaccaccg 6712890  T
Q  243 tcattgtcgaatcttcatgatgtgtttcatgtg 275  Q
    || ||||||||||||||||||||||||||||||    
T  6712891 tctttgtcgaatcttcatgatgtgtttcatgtg 6712923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 144 - 279
Target Start/End: Original strand, 8274791 - 8274926
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||||||||||||||   |||||||| || ||||||||||| | ||||||  |  ||||||||||||| | ||||||||||  |||||||||||||||||    
T  8274791 cgtgctttgaagtgtaggaagttgactcctcgttttgttgggccgtttgatgtcattgagaaggttggggttgtagcgtatcggattgcgttaccaccgt 8274890  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | ||||||||||||||| ||||||||||||||||||    
T  8274891 ctttgtcgaatcttcataatgtgtttcatgtgtctc 8274926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 24 - 122
Target Start/End: Original strand, 4655864 - 4655963
Alignment:
Q  24 acatattcaaataattcacatgattcaccgatgcacataagcaagtatgacatctgtcaagttatgcaatgcgcctatacactac-tctatatgcatgtg 122  Q
    |||||||||| |||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||  || ||||||||||||||    
T  4655864 acatattcaactaattcacataattcaccaatgcacataagcaagtatgacacctgtcaagttatgcaatgcgcctagacaggacttctatatgcatgtg 4655963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 128 - 279
Target Start/End: Complemental strand, 18748429 - 18748283
Alignment:
Q  128 tgtaaccgttgttgtacgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcg 227  Q
    |||||| | ||||| ||||||||||||||||| ||||||||| || ||||||||||||| |||||||||| || |||||||| | | |||| ||     |    
T  18748429 tgtaactggtgttggacgtgctttgaagtgtcgaaagttgactcctcgttttgttggaccgtttgagattattaagaaggttagggttgtatcg-----g 18748335  T
Q  228 attgcgttaccaccgtcattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    ||||||||| ||||||| ||||||||||| |||| |||||||||||||||||    
T  18748334 attgcgttagcaccgtctttgtcgaatctgcatggtgtgtttcatgtgtctc 18748283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 279
Target Start/End: Original strand, 13975437 - 13975572
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||| ||||||||||   |||||||| || ||||| ||||| | ||||||  |  ||||||||||||| | ||||||||||  |||||||||||||||||    
T  13975437 cgtgttttgaagtgtaggaagttgactcctcgtttcgttgggccgtttgatgtcattgagaaggttggggttgtagcgtatcggattgcgttaccaccgt 13975536  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | ||||||||||||||| ||||||||||||||||||    
T  13975537 ctttgtcgaatcttcataatgtgtttcatgtgtctc 13975572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 279
Target Start/End: Complemental strand, 15576498 - 15576363
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||||||||||||||   |||||||| || ||||||||||| ||||||||  |  ||||||||||||| | |||||| ||   ||||||||| |||||||    
T  15576498 cgtgctttgaagtgtaggaagttgactcctcgttttgttgggctgtttgatgtgattgagaaggttggggttgtagcataccggattgcgttgccaccgt 15576399  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | ||||||||||||||| ||||||||||||||||||    
T  15576398 ctttgtcgaatcttcataatgtgtttcatgtgtctc 15576363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 144 - 278
Target Start/End: Original strand, 16743095 - 16743229
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||||||||||||||   |||||||| || ||||||||||||| ||||||  |  ||||||||||||| | ||||||||||| ||||| |||||||| ||    
T  16743095 cgtgctttgaagtgtaggaagttgactcctcgttttgttggaccgtttgatgtcattgagaaggttggggttgtagcgtattggattgtgttaccactgt 16743194  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtct 278  Q
    | ||||| ||||||||| |||| ||||||||||||    
T  16743195 ctttgtccaatcttcataatgtttttcatgtgtct 16743229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 151 - 279
Target Start/End: Complemental strand, 17192835 - 17192707
Alignment:
Q  151 tgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgtcattgtc 250  Q
    |||||||||  |||||||| || ||||||||||| |  |||||  |||||||||||||||| | |||||||||   ||||||| |||||| ||| |||||    
T  17192835 tgaagtgtcggaagttgactcctcgttttgttgggccttttgatgttgttgagaaggttggggttgtagcgtaccggattgcgctaccactgtctttgtc 17192736  T
Q  251 gaatcttcatgatgtgtttcatgtgtctc 279  Q
     ||||||||||||||||||||||||||||    
T  17192735 aaatcttcatgatgtgtttcatgtgtctc 17192707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 175 - 278
Target Start/End: Original strand, 267681 - 267784
Alignment:
Q  175 gttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgtcattgtcgaatcttcatgatgtgtttcatgt 274  Q
    |||||||||||| |||||||||| ||||||||||| || | |||||||||  ||||||| |||| ||||| ||| ||||||||||| || ||||||||||    
T  267681 gttttgttggaccgtttgagattattgagaaggttagatcagtagcgtatcggattgcgctaccgccgtcgttgccgaatcttcattatttgtttcatgt 267780  T
Q  275 gtct 278  Q
    ||||    
T  267781 gtct 267784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 15956968 - 15957034
Alignment:
Q  56 gcacataagcaagtatgacatctgtcaagttatgcaatgcgcctatacactactctatatgcatgtg 122  Q
    ||||||||||||| |||||| |||||||||||||||||||||||| |||| ||||||||||||||||    
T  15956968 gcacataagcaagaatgacacctgtcaagttatgcaatgcgcctagacacgactctatatgcatgtg 15957034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 197
Target Start/End: Complemental strand, 21686717 - 21686640
Alignment:
Q  120 gtgattcatgtaaccgttgttgtacgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagatt 197  Q
    |||| ||||||||||| ||||| ||||||||||||||||| ||||||||| ||  |||||||||||||||||||||||    
T  21686717 gtgaatcatgtaaccgatgttggacgtgctttgaagtgtcgaaagttgacaccttgttttgttggactgtttgagatt 21686640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 279
Target Start/End: Original strand, 6153231 - 6153366
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    ||||||||||||||   ||||||||| || |||||||| |||| ||||||  || |||||||||| |  | ||||||||||  |||||| || ||||| |    
T  6153231 cgtgctttgaagtgcagaaagttgactcctcgttttgtcggaccgtttgatgttattgagaaggtcgaggttgtagcgtatcggattgcattgccaccat 6153330  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | || |||||||||||| ||||||||||||||||||    
T  6153331 ctttttcgaatcttcataatgtgtttcatgtgtctc 6153366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 15046735 - 15046669
Alignment:
Q  56 gcacataagcaagtatgacatctgtcaagttatgcaatgcgcctatacactactctatatgcatgtg 122  Q
    ||||||||||||||||||||  ||| ||||||||||||||||||| |||| ||||||||||||||||    
T  15046735 gcacataagcaagtatgacacttgttaagttatgcaatgcgcctagacacaactctatatgcatgtg 15046669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 124
Target Start/End: Complemental strand, 38278285 - 38278220
Alignment:
Q  59 cataagcaagtatgacatctgtcaagttatgcaatgcgcctatacactactctatatgcatgtgat 124  Q
    |||||||||||||||||  ||||||||||||||||||||||| |||| ||||| ||||||||||||    
T  38278285 cataagcaagtatgacacatgtcaagttatgcaatgcgcctagacacgactctctatgcatgtgat 38278220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 279
Target Start/End: Complemental strand, 21686639 - 21686588
Alignment:
Q  228 attgcgttaccaccgtcattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    |||||||||||  |||| ||||| ||||||||||||||||||||||| ||||    
T  21686639 attgcgttaccgtcgtcgttgtctaatcttcatgatgtgtttcatgtatctc 21686588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 122
Target Start/End: Complemental strand, 3294671 - 3294635
Alignment:
Q  86 tatgcaatgcgcctatacactactctatatgcatgtg 122  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  3294671 tatgcaatgcgcctagacacgactctatatgcatgtg 3294635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 128 - 279
Target Start/End: Complemental strand, 46320 - 46169
Alignment:
Q  128 tgtaaccgttgttgtacgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcg 227  Q
    |||||||| |||||  |||||||||||||||   |||||||| || ||||||||||||| ||||||  |  ||||||||||||| ||||||||||||  |    
T  46320 tgtaaccggtgttggtcgtgctttgaagtgtaggaagttgactcctcgttttgttggaccgtttgatgtcattgagaaggttggggctgtagcgtatcgg 46221  T
Q  228 attgcgttaccaccgtcattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  46220 attgcgttaccaccgtctttgtcgaatcttcataatgtgtttcatgtgtctc 46169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0551 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0551
Description:

Target: scaffold0551; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 120 - 279
Target Start/End: Complemental strand, 8269 - 8110
Alignment:
Q  120 gtgattcatgtaaccgttgttgtacgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtag 219  Q
    |||| |||||| |||| |||||  |||||||||| ||||   |||||||| || ||||||||||||| ||||||  || ||||||||||||| | |||||    
T  8269 gtgaatcatgtgaccggtgttggtcgtgctttgatgtgtaggaagttgactcctcgttttgttggaccgtttgatgttattgagaaggttggggttgtag 8170  T
Q  220 cgtattcgattgcgttaccaccgtcattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    |||||  |||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  8169 cgtatcggattgcgttaccaccgtctttgtcgaatcttcataatgtgtttcatgtgtctc 8110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 120 - 279
Target Start/End: Original strand, 28398 - 28557
Alignment:
Q  120 gtgattcatgtaaccgttgttgtacgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtag 219  Q
    |||| |||||| |||| |||||  |||||||||||||||   |||||||| || || |||||||||| ||||||  || ||||||||||||| | |||||    
T  28398 gtgaatcatgtgaccggtgttggtcgtgctttgaagtgtaggaagttgactcctcgatttgttggaccgtttgatgttattgagaaggttggggttgtag 28497  T
Q  220 cgtattcgattgcgttaccaccgtcattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    |||||  |||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  28498 cgtataggattgcgttaccaccgtctttgtcgaatcttcataatgtgtttcatgtgtctc 28557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 29773 - 29709
Alignment:
Q  54 atgcacataagcaagtatgacatctgtcaagttatgcaatgcgcctatacactactctatatgca 118  Q
    |||||||||||||||||||||| ||||||||||||||||||||| || |||| ||||||||||||    
T  29773 atgcacataagcaagtatgacacctgtcaagttatgcaatgcgcatagacacgactctatatgca 29709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0507 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0507
Description:

Target: scaffold0507; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 144 - 276
Target Start/End: Original strand, 489 - 621
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||||||||||||||   |||||||| || ||||||||||||| ||||||  |||||||||||||||| |  |||||||||  |||||||||||||||||    
T  489 cgtgctttgaagtgtaggaagttgactccccgttttgttggaccgtttgatgttgttgagaaggttggggtcgtagcgtatcggattgcgttaccaccgt 588  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgt 276  Q
    | |||||||||||||||||||| ||||||||||    
T  589 ctttgtcgaatcttcatgatgtatttcatgtgt 621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 120 - 276
Target Start/End: Complemental strand, 231732 - 231576
Alignment:
Q  120 gtgattcatgtaaccgttgttgtacgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtag 219  Q
    |||| |||||||||   ||||| |||||||||||||||||  |||||||| || ||||||||||||| || |||||||||| | |||||| |||  | ||    
T  231732 gtgaatcatgtaacatgtgttggacgtgctttgaagtgtcggaagttgacacctcgttttgttggaccgtatgagattgttaaaaaggttagagtggcag 231633  T
Q  220 cgtattcgattgcgttaccaccgtcattgtcgaatcttcatgatgtgtttcatgtgt 276  Q
    |||||  || ||||||||||||||| |||||||||||||||||||||||||||||||    
T  231632 cgtatcagaatgcgttaccaccgtctttgtcgaatcttcatgatgtgtttcatgtgt 231576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 144 - 279
Target Start/End: Complemental strand, 24030 - 23895
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||||||||||||||   |||||||| ||  |||||||| ||| ||||||  || ||||||||||||| | ||||||||||  |||||||||||||||||    
T  24030 cgtgctttgaagtgtaggaagttgactccttgttttgttagaccgtttgatgttattgagaaggttggggttgtagcgtatcggattgcgttaccaccgt 23931  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | ||||||||||||||| ||||||||||||||||||    
T  23930 ctttgtcgaatcttcataatgtgtttcatgtgtctc 23895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 144 - 279
Target Start/End: Complemental strand, 3309 - 3174
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||||||||||||||   |||||||| || ||||||||||||| ||||||  | |||||||||||||| | ||||||||||  |||||| |||||||| |    
T  3309 cgtgctttgaagtgtaggaagttgactcctcgttttgttggaccgtttgatgtcgttgagaaggttggggttgtagcgtatcggattgcattaccaccat 3210  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | ||||||||||||||||||||||||||||||||||    
T  3209 ctttgtcgaatcttcatgatgtgtttcatgtgtctc 3174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 144 - 279
Target Start/End: Complemental strand, 14807 - 14672
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||||||||||||||   |||||||| || ||||||||||||| ||||||  || ||||||||||||| | ||||||||||  ||||||||||||| | |    
T  14807 cgtgctttgaagtgtaggaagttgactcctcgttttgttggaccgtttgatgttattgagaaggttggggttgtagcgtatcggattgcgttaccatcat 14708  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | ||||||||||||||||||||||||||||||||||    
T  14707 ctttgtcgaatcttcatgatgtgtttcatgtgtctc 14672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 128 - 279
Target Start/End: Complemental strand, 43704 - 43553
Alignment:
Q  128 tgtaaccgttgttgtacgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcg 227  Q
    ||||||||| ||||  |||||||| ||||||   || ||||| || |||||||||||||  |||||  || ||||||||||| | | ||||| ||||  |    
T  43704 tgtaaccgtagttggtcgtgctttaaagtgtaggaaattgactcctcgttttgttggaccatttgatgttattgagaaggttagggttgtagtgtatcgg 43605  T
Q  228 attgcgttaccaccgtcattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    |||||||||||||| || ||||||||||||||| ||||||||||||||||||    
T  43604 attgcgttaccaccatctttgtcgaatcttcataatgtgtttcatgtgtctc 43553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 9e-33; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 144 - 279
Target Start/End: Original strand, 22142266 - 22142401
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    ||||||||||||||| | |||||||| || | |||||||||||  |||||| || ||||||||||||| | ||||||||||  ||||| |||||||| ||    
T  22142266 cgtgctttgaagtgtaagaagttgactcctcattttgttggaccatttgaggttattgagaaggttggggttgtagcgtatcagattgtgttaccactgt 22142365  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | ||||||||||||||||||||||||||||||||||    
T  22142366 ctttgtcgaatcttcatgatgtgtttcatgtgtctc 22142401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 144 - 279
Target Start/End: Complemental strand, 46518855 - 46518720
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||||||||||||||   |||||||| || ||||||||||| | ||||||  |  ||||||||||||| | ||||||||||  |||||||||||||||||    
T  46518855 cgtgctttgaagtgtaggaagttgactcctcgttttgttgggccgtttgatgtcattgagaaggttggggttgtagcgtatcggattgcgttaccaccgt 46518756  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | ||||||||||||||| ||||||||||||||||||    
T  46518755 ctttgtcgaatcttcataatgtgtttcatgtgtctc 46518720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 130 - 279
Target Start/End: Original strand, 21202498 - 21202647
Alignment:
Q  130 taaccgttgttgtacgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgat 229  Q
    |||||| ||||| |||| ||||||||||||  ||||||||   || ||||||| |||  ||||||||||| ||||| ||||||| ||||||||||  |||    
T  21202498 taaccggtgttggacgtactttgaagtgtcggaagttgacattgcattttgttagaccttttgagattgtcgagaaagttggagttgtagcgtatcggat 21202597  T
Q  230 tgcgttaccaccgtcattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    ||||||||| || || ||||||||||||| || |||||||||||||||||    
T  21202598 tgcgttaccgccatcgttgtcgaatcttcttgttgtgtttcatgtgtctc 21202647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 279
Target Start/End: Complemental strand, 20914344 - 20914209
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||||||||||||||   |||||||| || ||||||||||||| ||||||  |  ||| ||||||||| | ||||||||||   ||||||||||||||||    
T  20914344 cgtgctttgaagtgtaggaagttgactcctcgttttgttggaccgtttgatgtcattgtgaaggttggggttgtagcgtatcgaattgcgttaccaccgt 20914245  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | ||||||||||||||| |||||||||||| |||||    
T  20914244 ctttgtcgaatcttcataatgtgtttcatgcgtctc 20914209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 144 - 279
Target Start/End: Original strand, 20831617 - 20831752
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||||||| ||||||   |||||||| || ||||||||||| | ||||||  |  ||||||||||||| | |||||||||   ||||||||| |||||||    
T  20831617 cgtgctttaaagtgtaggaagttgactcctcgttttgttgggccgtttgatgtcattgagaaggttggggttgtagcgtaccggattgcgttgccaccgt 20831716  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | ||||||||||||||| ||||||||||||||||||    
T  20831717 ctttgtcgaatcttcataatgtgtttcatgtgtctc 20831752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 144 - 225
Target Start/End: Complemental strand, 20184315 - 20184234
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtatt 225  Q
    ||||||||||||||||  |||||||| || ||||||||||||| |||||||||||||||||| ||| ||| |||| ||||||    
T  20184315 cgtgctttgaagtgtcggaagttgacaccacgttttgttggaccgtttgagattgttgagaatgttagagttgtaacgtatt 20184234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 22613871 - 22613932
Alignment:
Q  61 taagcaagtatgacatctgtcaagttatgcaatgcgcctatacactactctatatgcatgtg 122  Q
    |||||||||| |||| |||||||||||||||||||||||| |||| ||||||||| ||||||    
T  22613871 taagcaagtacgacacctgtcaagttatgcaatgcgcctagacacgactctatattcatgtg 22613932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 20406656 - 20406722
Alignment:
Q  56 gcacataagcaagtatgacatctgtcaagttatgcaatgcgcctatacactactctatatgcatgtg 122  Q
    ||||| ||||||||| |||| ||||||||||||| |||||||||| |||  ||||||||||||||||    
T  20406656 gcacacaagcaagtacgacacctgtcaagttatggaatgcgcctagacaggactctatatgcatgtg 20406722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 144 - 278
Target Start/End: Original strand, 16877691 - 16877825
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||||||||||||||   |||||||| || ||||||||||||| ||||||  |  ||||||||||||| | ||||||||||  |||||||||||||||||    
T  16877691 cgtgctttgaagtgtaggaagttgactcctcgttttgttggaccgtttgatgtcattgagaaggttggggttgtagcgtatcggattgcgttaccaccgt 16877790  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtct 278  Q
    | ||||||||||||||| |||||||||||||||||    
T  16877791 ctttgtcgaatcttcataatgtgtttcatgtgtct 16877825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 120 - 279
Target Start/End: Original strand, 20652905 - 20653064
Alignment:
Q  120 gtgattcatgtaaccgttgttgtacgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtag 219  Q
    |||| |||||| |||| |||||  |||||||||||||||   |||||||| || ||||| ||||||| ||||||  | |||||||||||||| | |||||    
T  20652905 gtgaatcatgtgaccggtgttggtcgtgctttgaagtgtaggaagttgactcctcgtttcgttggaccgtttgatgtggttgagaaggttggggttgtag 20653004  T
Q  220 cgtattcgattgcgttaccaccgtcattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    |||||  |||||| |||||||| || ||||||||||||||||||||||||||||| ||||    
T  20653005 cgtatcggattgcattaccaccatcgttgtcgaatcttcatgatgtgtttcatgtatctc 20653064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 148 - 279
Target Start/End: Original strand, 21197102 - 21197233
Alignment:
Q  148 ctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgtcatt 247  Q
    |||||||||||   |||||||| || ||||||||||| | ||||||  ||||||||| |||||| | ||||||||||  ||||||||||||| |||| ||    
T  21197102 ctttgaagtgtaggaagttgactcctcgttttgttgggccgtttgatgttgttgagacggttggggttgtagcgtatcggattgcgttaccatcgtcttt 21197201  T
Q  248 gtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    ||||||||||||||||||||||||||||||||    
T  21197202 gtcgaatcttcatgatgtgtttcatgtgtctc 21197233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 144 - 279
Target Start/End: Original strand, 21850933 - 21851068
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||| ||||||||||   |||||||| || ||||||||||| | ||||||  |  ||||||||||||| | ||||||||||  |||||||||||||||||    
T  21850933 cgtgatttgaagtgtaggaagttgactcctcgttttgttgggccgtttgatgtcattgagaaggttggggttgtagcgtatcagattgcgttaccaccgt 21851032  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | ||||||||||||||| ||||||||||||||||||    
T  21851033 ctttgtcgaatcttcataatgtgtttcatgtgtctc 21851068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 144 - 271
Target Start/End: Complemental strand, 22315376 - 22315249
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    ||||||||||||||||  |||||||| || |||||||||||||  ||||||||| ||||||||||||| | |||||| |||  ||||||||||||||| |    
T  22315376 cgtgctttgaagtgtcggaagttgactcctcgttttgttggaccatttgagattattgagaaggttggggttgtagcatatcggattgcgttaccaccat 22315277  T
Q  244 cattgtcgaatcttcatgatgtgtttca 271  Q
    | ||||||||| | ||||||||||||||    
T  22315276 cgttgtcgaatttacatgatgtgtttca 22315249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 144 - 279
Target Start/End: Complemental strand, 22982621 - 22982486
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    ||||||||||||||||| |||||||| || |||||||| |||| ||||||  |||||||| |  |||| | ||||||||||  ||||||||| ||||| |    
T  22982621 cgtgctttgaagtgtcagaagttgactcctcgttttgtcggaccgtttgatgttgttgaggaaattggggttgtagcgtatcggattgcgttgccaccat 22982522  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | ||| ||||||||||||||||||||||||||||||    
T  22982521 ctttgccgaatcttcatgatgtgtttcatgtgtctc 22982486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 196 - 279
Target Start/End: Complemental strand, 23151081 - 23150998
Alignment:
Q  196 ttgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgtcattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    |||||||||||||||| | ||||||||||  || |||||||||| |||| |||||||||||||||||| |||||||||||||||    
T  23151081 ttgttgagaaggttggggttgtagcgtatcagaatgcgttaccatcgtctttgtcgaatcttcatgatatgtttcatgtgtctc 23150998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 120 - 279
Target Start/End: Complemental strand, 25282340 - 25282180
Alignment:
Q  120 gtgattcatgtaaccgttgttgtacgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtag 219  Q
    |||| ||||||||||  ||||| |||| |||||| |||| | ||||||||  || |||||||||| ||||||||| || ||||||| ||||||| |||||    
T  25282340 gtgaatcatgtaaccagtgttggacgtactttgatgtgttagaagttgacagcgtgttttgttgggctgtttgagtttattgagaatgttggagatgtag 25282241  T
Q  220 cgtattcgattgcgttaccaccgtcattgt-cgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | |||  |||||||||  | ||||| || | ||||| ||||||||||||||||||| ||||    
T  25282240 catatcagattgcgttttcgccgtcgtttttcgaattttcatgatgtgtttcatgtatctc 25282180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 274
Target Start/End: Original strand, 24818211 - 24818342
Alignment:
Q  143 acgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccg 242  Q
    ||||||||||||||||   |||||||| ||   |||| |||| |  ||||||||  ||||||| || ||||| |||||||||  ||||||||| || |||    
T  24818211 acgtgctttgaagtgtaggaagttgacaccatattttattggtccatttgagatcattgagaaagtgggagcagtagcgtatcggattgcgttgccgccg 24818310  T
Q  243 tcattgtcgaatcttcatgatgtgtttcatgt 274  Q
    |  |||||||||||||||  ||| ||||||||    
T  24818311 ttgttgtcgaatcttcatagtgtatttcatgt 24818342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 260
Target Start/End: Complemental strand, 24094328 - 24094211
Alignment:
Q  143 acgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccg 242  Q
    ||||||||||||||||   |||||||| || |||||  |||| |||||| ||||| |  |||||||||||| |||| |||||  |||| | || |  |||    
T  24094328 acgtgctttgaagtgtaggaagttgacaccacgtttacttggtctgtttaagattatcaagaaggttggagttgtaccgtatcggatttcattgcttccg 24094229  T
Q  243 tcattgtcgaatcttcat 260  Q
    || |||||||||||||||    
T  24094228 tcgttgtcgaatcttcat 24094211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1710 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold1710
Description:

Target: scaffold1710; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 144 - 279
Target Start/End: Original strand, 1066 - 1201
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||||||||||||||   |||||||| || ||||||||||||| ||||||  || ||||||||||||| | ||||||||||  ||||||||||||||| |    
T  1066 cgtgctttgaagtgtaggaagttgactcctcgttttgttggaccgtttgatgttattgagaaggttggggttgtagcgtatcggattgcgttaccaccat 1165  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | ||||||||||||||| ||||||||||||| ||||    
T  1166 ctttgtcgaatcttcataatgtgtttcatgtatctc 1201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0808 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0808
Description:

Target: scaffold0808; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 144 - 279
Target Start/End: Original strand, 1210 - 1345
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    ||||||||||||||||  |||||||| || ||||||||||||| ||||||  || ||||||||||||| | ||||||||||  ||||||||||||||| |    
T  1210 cgtgctttgaagtgtcggaagttgactcctcgttttgttggaccgtttgatgttattgagaaggttggggttgtagcgtatcggattgcgttaccaccat 1309  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | ||||||||||||||||||||| || |||| ||||    
T  1310 ctttgtcgaatcttcatgatgtgattaatgtatctc 1345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0109 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0109
Description:

Target: scaffold0109; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 144 - 279
Target Start/End: Original strand, 44602 - 44737
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||||||||||||||   |||||||| || ||||||||||||| ||||||  || ||||| ||||||  | ||||||||||  |||||||||||||||||    
T  44602 cgtgctttgaagtgtaggaagttgactcctcgttttgttggaccgtttgatgttattgagcaggttgaggttgtagcgtatcggattgcgttaccaccgt 44701  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | ||||||||||||||| ||||||||||||||||||    
T  44702 ctttgtcgaatcttcataatgtgtttcatgtgtctc 44737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0589 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: scaffold0589
Description:

Target: scaffold0589; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 120 - 278
Target Start/End: Complemental strand, 9161 - 9003
Alignment:
Q  120 gtgattcatgtaaccgttgttgtacgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtag 219  Q
    |||| ||||||||| | |||||  |||||||||||||||   || ||||| || ||||||||||||| ||||||  | || ||||||||||| | |||||    
T  9161 gtgaatcatgtaactggtgttggtcgtgctttgaagtgttggaatttgactcctcgttttgttggaccgtttgatgtcgtagagaaggttggggttgtag 9062  T
Q  220 cgtattcgattgcgttaccaccgtcattgtcgaatcttcatgatgtgtttcatgtgtct 278  Q
    |||||  |||||||||||||||||| |||| ||||||||||||||||||||| ||||||    
T  9061 cgtatcggattgcgttaccaccgtctttgttgaatcttcatgatgtgtttcacgtgtct 9003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 8e-30; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 144 - 278
Target Start/End: Complemental strand, 24581244 - 24581110
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||||||||||||||   |||||||| || ||||||||||| | ||||||  |  ||||||||||||| | ||||||||||  |||||||||||||||||    
T  24581244 cgtgctttgaagtgtaggaagttgactcctcgttttgttgggccgtttgatgtcattgagaaggttggggttgtagcgtatcagattgcgttaccaccgt 24581145  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtct 278  Q
    | ||||||||||||||| |||||||||||||||||    
T  24581144 ctttgtcgaatcttcataatgtgtttcatgtgtct 24581110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 144 - 279
Target Start/End: Original strand, 11211029 - 11211164
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||||||||||||||   |||||||| || ||||||||||||| ||||||  || ||||||||||||| | ||| ||||||  ||||||||||||||| |    
T  11211029 cgtgctttgaagtgtaggaagttgactcctcgttttgttggaccgtttgatgttattgagaaggttggggttgtggcgtatcggattgcgttaccaccat 11211128  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | ||||||||||||||  ||||||||||||||||||    
T  11211129 ctttgtcgaatcttcacaatgtgtttcatgtgtctc 11211164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 144 - 279
Target Start/End: Original strand, 21937523 - 21937658
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||||||||||||||   |||||||| || ||||||||||| ||||||||  |  ||||||||||||| | |||||||||   ||||||||| |||||||    
T  21937523 cgtgctttgaagtgtaggaagttgactcctcgttttgttgggctgtttgatgtcattgagaaggttggggttgtagcgtaccggattgcgttgccaccgt 21937622  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | ||||||||||||||| ||||||||||||||||||    
T  21937623 ctttgtcgaatcttcataatgtgtttcatgtgtctc 21937658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 120 - 279
Target Start/End: Complemental strand, 23503500 - 23503341
Alignment:
Q  120 gtgattcatgtaaccgttgttgtacgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtag 219  Q
    |||| |||||| |||| |||||  ||| |||||||||||   |||||||  || ||||||||||||| ||||||  || ||||||||||| | | |||||    
T  23503500 gtgaatcatgtgaccggtgttggtcgtcctttgaagtgtaggaagttgaatcctcgttttgttggaccgtttgatgttattgagaaggttagggttgtag 23503401  T
Q  220 cgtattcgattgcgttaccaccgtcattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
     ||||  |||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  23503400 tgtatcggattgcgttaccaccgtctttgtcgaatcttcataatgtgtttcatgtgtctc 23503341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 279
Target Start/End: Complemental strand, 27011117 - 27010983
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||||||||||||||   |||||||| || ||||||||||| | ||||||  |  ||||||||||||| | ||||||||||  |||||||||||||||||    
T  27011117 cgtgctttgaagtgtaggaagttgactcctcgttttgttggcc-gtttgatgtcattgagaaggttggggttgtagcgtatcagattgcgttaccaccgt 27011019  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | ||||| ||||||||| ||||||||||||||||||    
T  27011018 ctttgtcaaatcttcataatgtgtttcatgtgtctc 27010983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 125 - 277
Target Start/End: Complemental strand, 24516611 - 24516460
Alignment:
Q  125 tcatgtaaccgttgttgtacgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtat 224  Q
    ||||||||||| ||||| |||||||||||||| ||  |||||||| || | ||||||| ||| |||||||||||||||||||||||||| |||| |||      
T  24516611 tcatgtaaccggtgttggacgtgctttgaagtatcggaagttgacaccacattttgtttgaccgtttgagattgttgagaaggttggagttgtaacgt-g 24516513  T
Q  225 tcgattgcgttaccaccgtcattgtcgaatcttcatgatgtgtttcatgtgtc 277  Q
    ||| |||||||| | |  || || |||||||||||||||| ||||| ||||||    
T  24516512 tcggttgcgttatcgctatcgttatcgaatcttcatgatgcgtttcttgtgtc 24516460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 22447265 - 22447330
Alignment:
Q  57 cacataagcaagtatgacatctgtcaagttatgcaatgcgcctatacactactctatatgcatgtg 122  Q
    |||||||||||||||||||  ||||||||| ||||||| ||||| |||| | ||||||||||||||    
T  22447265 cacataagcaagtatgacacttgtcaagttttgcaatgtgcctagacacgagtctatatgcatgtg 22447330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 122
Target Start/End: Original strand, 17362790 - 17362826
Alignment:
Q  86 tatgcaatgcgcctatacactactctatatgcatgtg 122  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  17362790 tatgcaatgcgcctagacacgactctatatgcatgtg 17362826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 162 - 279
Target Start/End: Original strand, 106747 - 106864
Alignment:
Q  162 aagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgtcattgtcgaatcttcatg 261  Q
    |||||||| || ||||||||||||| ||||||  || ||||||||||||| | ||||||||||  |||||||||||||||||| |||| ||||||||||     
T  106747 aagttgactcctcgttttgttggaccgtttgatgttattgagaaggttggggttgtagcgtatcagattgcgttaccaccgtctttgttgaatcttcata 106846  T
Q  262 atgtgtttcatgtgtctc 279  Q
    ||||||||||||||||||    
T  106847 atgtgtttcatgtgtctc 106864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0692 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 144 - 279
Target Start/End: Original strand, 4031 - 4166
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||||||| ||||||   |||||||| || ||||| ||||||| ||||||  || ||||||||||||| | ||||||||||  |||||| ||||||||||    
T  4031 cgtgctttaaagtgtaggaagttgactcctcgtttagttggaccgtttgatgttattgagaaggttggggttgtagcgtatcggattgcattaccaccgt 4130  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | ||||||||||||||| ||||||||||||||||||    
T  4131 ctttgtcgaatcttcataatgtgtttcatgtgtctc 4166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 144 - 279
Target Start/End: Complemental strand, 23544 - 23409
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||||||||||||||   ||||||||  | ||||||||||||| ||||||  |  ||||||||||||| | ||||||||||  ||||||||||||||| |    
T  23544 cgtgctttgaagtgtaggaagttgactgctcgttttgttggaccgtttgatgtcattgagaaggttggggttgtagcgtatcggattgcgttaccacctt 23445  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | ||||||||||||||| ||||||||||||||||||    
T  23444 ctttgtcgaatcttcataatgtgtttcatgtgtctc 23409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 144 - 279
Target Start/End: Complemental strand, 98165 - 98030
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||||||||||||||   |||||||| || ||||||||||| | ||||||  |  ||||||||||||| | ||||||||||  |||||||||||||||||    
T  98165 cgtgctttgaagtgtaggaagttgactcctcgttttgttgggccgtttgatgtcattgagaaggttggggttgtagcgtatcggattgcgttaccaccgt 98066  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | |||| |||||||||| ||||||||||||||||||    
T  98065 ctttgttgaatcttcataatgtgtttcatgtgtctc 98030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 279
Target Start/End: Original strand, 23622 - 23757
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||||||||||||||   |||||||| || | |||| |||||| ||||||  || |||||||||||||   ||||||||||  ||||||||||||||| |    
T  23622 cgtgctttgaagtgtaggaagttgactccccattttattggaccgtttgatgttattgagaaggttgggattgtagcgtatcggattgcgttaccaccat 23721  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | ||||||||||||||| ||||||||||||||||||    
T  23722 ctttgtcgaatcttcataatgtgtttcatgtgtctc 23757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 144 - 279
Target Start/End: Complemental strand, 13401 - 13266
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    ||||| || |||||||  |||||||| || |||||||||||  |||||||  ||||||||| |||||| | ||||||||||  ||||| |||||||||||    
T  13401 cgtgcgttaaagtgtcggaagttgactcctcgttttgttgggttgtttgatgttgttgagagggttggggttgtagcgtatcagattgtgttaccaccgt 13302  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | ||||||||||||||||||||||||||||| ||||    
T  13301 ctttgtcgaatcttcatgatgtgtttcatgtatctc 13266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 144 - 271
Target Start/End: Complemental strand, 6460 - 6333
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    ||||| || |||||||  ||||| || || ||||||||||| | ||||||  ||||||||| |||||| | ||||||||||  |||||||||||||| ||    
T  6460 cgtgcgttaaagtgtcggaagttaactccacgttttgttgggccgtttgatgttgttgagagggttggggttgtagcgtatcggattgcgttaccactgt 6361  T
Q  244 cattgtcgaatcttcatgatgtgtttca 271  Q
    | ||||||||||||||||||||||||||    
T  6360 ctttgtcgaatcttcatgatgtgtttca 6333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 144 - 279
Target Start/End: Original strand, 78785 - 78920
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||||||||||||||   |||||||| || ||||||||||||| ||||||  || | ||||||||||| | ||||||||||  |||||||||||||||||    
T  78785 cgtgctttgaagtgtaggaagttgactcctcgttttgttggacggtttgatgttatagagaaggttggggttgtagcgtatcggattgcgttaccaccgt 78884  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    |  |||| ||||||||| ||||||||||||||||||    
T  78885 ctatgtcaaatcttcataatgtgtttcatgtgtctc 78920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0761 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0761
Description:

Target: scaffold0761; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 279
Target Start/End: Original strand, 542 - 677
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    ||||||||| |||||   |||||||| || ||||||||||||  ||||||  |  ||||||||||||| | ||||||||||  |||||||||||||||||    
T  542 cgtgctttggagtgtaggaagttgactcctcgttttgttggaacgtttgatgtcattgagaaggttggggttgtagcgtatcggattgcgttaccaccgt 641  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | ||||||||||||||| |||| |||||||||||||    
T  642 ctttgtcgaatcttcataatgtatttcatgtgtctc 677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 279
Target Start/End: Original strand, 33151 - 33285
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    ||||||||||||||| | |||||||| || |||||||||||| |||||||  |   |||||||||||| | |||||| |||  |||||||||||||||||    
T  33151 cgtgctttgaagtgtaagaagttgactcctcgttttgttggattgtttgatgtaactgagaaggttggggttgtagc-tatcagattgcgttaccaccgt 33249  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | ||||||||||||||| |||||| |||||||||||    
T  33250 ctttgtcgaatcttcataatgtgtatcatgtgtctc 33285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 279
Target Start/End: Original strand, 122106 - 122241
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||||||||||||||   |||||||| || | |||||||||||  ||| |  |  ||||||||||||| | ||||||||||  |||||||||||||||||    
T  122106 cgtgctttgaagtgtaggaagttgactcctcattttgttggaccatttaatgtaattgagaaggttggggatgtagcgtataggattgcgttaccaccgt 122205  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | ||||||||||||||| ||||||||||||||||||    
T  122206 ctttgtcgaatcttcataatgtgtttcatgtgtctc 122241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 144 - 266
Target Start/End: Original strand, 14893 - 15014
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||||||||||||||   |||||||| || ||||| ||||||||||||||  || ||||||||||||| | ||||||||||  |||||||||||||||||    
T  14893 cgtgctttgaagtgtaggaagttgactcctcgttt-gttggactgtttgatgttattgagaaggttggggttgtagcgtatcggattgcgttaccaccgt 14991  T
Q  244 cattgtcgaatcttcatgatgtg 266  Q
    | ||||||||||||||| |||||    
T  14992 ctttgtcgaatcttcataatgtg 15014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 199 - 279
Target Start/End: Original strand, 5371 - 5451
Alignment:
Q  199 ttgagaaggttggagctgtagcgtattcgattgcgttaccaccgtcattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    ||||||||||||| | ||||||||||  |||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  5371 ttgagaaggttggggttgtagcgtatcggattgcgttaccaccgtctttgtcgaatcttcataatgtgtttcatgtgtctc 5451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0447 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0447
Description:

Target: scaffold0447; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 144 - 269
Target Start/End: Complemental strand, 5891 - 5766
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||||||||||||||   |||| ||| ||  |||||||||||| ||||||  || ||||||||||||| | ||||||||||  ||||||||||||||| |    
T  5891 cgtgctttgaagtgtaggaagtcgactccttgttttgttggaccgtttgatgttattgagaaggttggggttgtagcgtatcggattgcgttaccaccat 5792  T
Q  244 cattgtcgaatcttcatgatgtgttt 269  Q
    | ||||||||||||||||||||||||    
T  5791 ctttgtcgaatcttcatgatgtgttt 5766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0447; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 144 - 269
Target Start/End: Complemental strand, 10505 - 10380
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||||||||||||||   |||| ||| ||  |||||||||||| ||||||  || ||||||||||||| | ||||||||||  ||||||||||||||| |    
T  10505 cgtgctttgaagtgtaggaagtcgactccttgttttgttggaccgtttgatgttattgagaaggttggggttgtagcgtatcggattgcgttaccaccat 10406  T
Q  244 cattgtcgaatcttcatgatgtgttt 269  Q
    | ||||||||||||||||||||||||    
T  10405 ctttgtcgaatcttcatgatgtgttt 10380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0383 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0383
Description:

Target: scaffold0383; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 144 - 269
Target Start/End: Complemental strand, 8500 - 8375
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||||||||||||||   |||| ||| ||  |||||||||||| ||||||  || ||||||||||||| | ||||||||||  ||||||||||||||| |    
T  8500 cgtgctttgaagtgtaggaagtcgactccttgttttgttggaccgtttgatgttattgagaaggttggggttgtagcgtatcggattgcgttaccaccat 8401  T
Q  244 cattgtcgaatcttcatgatgtgttt 269  Q
    | ||||||||||||||||||||||||    
T  8400 ctttgtcgaatcttcatgatgtgttt 8375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 144 - 279
Target Start/End: Complemental strand, 40408 - 40273
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||||||| ||||||   |||||||| || ||||||||||| | ||||||  |  ||||||||||||| | |||||||||   ||||||||| |||||||    
T  40408 cgtgctttaaagtgtaggaagttgactcctcgttttgttgggccgtttgatgtcattgagaaggttggggttgtagcgtaccggattgcgttgccaccgt 40309  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | ||||||||||||||| ||||||||||||||||||    
T  40308 ctttgtcgaatcttcataatgtgtttcatgtgtctc 40273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0387 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0387
Description:

Target: scaffold0387; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 144 - 278
Target Start/End: Complemental strand, 14280 - 14146
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    ||||||||||||||||  |||||||| || ||||||||||| | ||||||  |  | ||||||||||| | ||||||||||  | |||||||||||| ||    
T  14280 cgtgctttgaagtgtcggaagttgactcctcgttttgttgggccgtttgatgtcatcgagaaggttggggttgtagcgtatcgggttgcgttaccacagt 14181  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtct 278  Q
    | ||| | |||||||||||||||||||||||||||    
T  14180 ctttggcaaatcttcatgatgtgtttcatgtgtct 14146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0615 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0615
Description:

Target: scaffold0615; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 162 - 279
Target Start/End: Original strand, 5201 - 5318
Alignment:
Q  162 aagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgtcattgtcgaatcttcatg 261  Q
    |||||||| || ||||||||||| |  |||||  || ||||||||||||| | ||||| ||||  |||||||||||||||||| |||| |||||||||||    
T  5201 aagttgactcctcgttttgttgggccatttgatgttattgagaaggttggggttgtagtgtatcggattgcgttaccaccgtctttgtagaatcttcatg 5300  T
Q  262 atgtgtttcatgtgtctc 279  Q
    ||||||||||||| ||||    
T  5301 atgtgtttcatgtttctc 5318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 146 - 279
Target Start/End: Original strand, 10467 - 10600
Alignment:
Q  146 tgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgtca 245  Q
    |||||||||||||   |||||||| || ||||||||||| |  |||||  || ||||||| ||||| | ||||||||||   |||||||||||||| ||     
T  10467 tgctttgaagtgtaggaagttgactcctcgttttgttgggccatttgatgttattgagaaagttggggttgtagcgtatcgaattgcgttaccaccatct 10566  T
Q  246 ttgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    ||||||||| ||||||||||||||||||||||||    
T  10567 ttgtcgaatattcatgatgtgtttcatgtgtctc 10600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 128 - 279
Target Start/End: Complemental strand, 74066 - 73916
Alignment:
Q  128 tgtaaccgttgttgtacgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcg 227  Q
    |||||||| ||||| ||||||||||||||||   |||||||| || ||||||||||||| ||||||||| | | | |||||||||| |||||| |||  |    
T  74066 tgtaaccggtgttggacgtgctttgaagtgttggaagttgacaccacgttttgttggaccgtttgagataggttataaggttggagatgtagcatatcgg 73967  T
Q  228 attgcgttaccaccgtcattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    |||||||||   | ||| |||  ||||||||||||||||||| |||||||||    
T  73966 attgcgttattgctgtcgttgcagaatcttcatgatgtgttt-atgtgtctc 73916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 215 - 279
Target Start/End: Complemental strand, 1265 - 1201
Alignment:
Q  215 tgtagcgtattcgattgcgttaccaccgtcattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    ||||||||||  |||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  1265 tgtagcgtatcggattgcgttaccaccgtctttgtcgaatcttcataatgtgtttcatgtgtctc 1201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 279
Target Start/End: Original strand, 4100 - 4235
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||||||||||||||   || ||||| || |||||||||||||  |||||  || ||||||||||| | | ||||| || |  ||||||||| |||||||    
T  4100 cgtgctttgaagtgtaggaatttgactcctcgttttgttggaccatttgatgttattgagaaggttagggttgtagagtgtcggattgcgttgccaccgt 4199  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    | |||| |||||||||| ||||||||||||||||||    
T  4200 ctttgtagaatcttcataatgtgtttcatgtgtctc 4235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2073 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold2073
Description:

Target: scaffold2073; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 373 - 439
Alignment:
Q  56 gcacataagcaagtatgacatctgtcaagttatgcaatgcgcctatacactactctatatgcatgtg 122  Q
    ||||||||| | |||||||| |||||||||||||||||||||||| |||| ||||||||||||||||    
T  373 gcacataagaaggtatgacacctgtcaagttatgcaatgcgcctagacacgactctatatgcatgtg 439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0234
Description:

Target: scaffold0234; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 144 - 278
Target Start/End: Original strand, 16327 - 16460
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccgt 243  Q
    |||||||||||||||   |||||||| || |||||| |||||| ||||||  || |||| ||||| || | ||||||||||  || || |||||||||||    
T  16327 cgtgctttgaagtgtaggaagttgactcctcgttttattggaccgtttgatgttattgaaaaggtggg-gttgtagcgtatcggagtgtgttaccaccgt 16425  T
Q  244 cattgtcgaatcttcatgatgtgtttcatgtgtct 278  Q
    | |||| |||||||||||||||||||| |||||||    
T  16426 ctttgttgaatcttcatgatgtgtttcgtgtgtct 16460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0162 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0162
Description:

Target: scaffold0162; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 215 - 279
Target Start/End: Complemental strand, 12987 - 12923
Alignment:
Q  215 tgtagcgtattcgattgcgttaccaccgtcattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    ||||||||||  |||| ||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  12987 tgtagcgtatcggatttcgttaccaccgtctttgtcgaatcttcataatgtgtttcatgtgtctc 12923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 53149 - 53213
Alignment:
Q  56 gcacataagcaagtatgacatctgtcaagttatgcaatgcgcctatacactactctatatgcatg 120  Q
    ||||||||||||||||||||  ||||||| ||||||||||||||| |||| ||||||||||||||    
T  53149 gcacataagcaagtatgacacatgtcaagctatgcaatgcgcctaaacacaactctatatgcatg 53213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 57101 - 57165
Alignment:
Q  56 gcacataagcaagtatgacatctgtcaagttatgcaatgcgcctatacactactctatatgcatg 120  Q
    ||||||||||||||||||||  ||||||| ||||||||||||||| |||| ||||||||||||||    
T  57101 gcacataagcaagtatgacacatgtcaagctatgcaatgcgcctaaacacaactctatatgcatg 57165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 144 - 278
Target Start/End: Original strand, 7966 - 8101
Alignment:
Q  144 cgtgctttgaagtgtcaaaagttgacgccgcgttttgttgg-actgtttgagattgttgagaaggttggagctgtagcgtattcgattgcgttaccaccg 242  Q
    |||||||||||||||   |||||||| || ||||||||||| || ||||||  |  |||| |||||||| | |||||||||    |||||||| ||||||    
T  7966 cgtgctttgaagtgtaggaagttgactcctcgttttgttggtaccgtttgatgtgattgaaaaggttggggttgtagcgtaccgaattgcgttgccaccg 8065  T
Q  243 tcattgtcgaatcttcatgatgtgtttcatgtgtct 278  Q
    || ||||||||||||||| |||||||||||| ||||    
T  8066 tctttgtcgaatcttcataatgtgtttcatgggtct 8101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 228 - 279
Target Start/End: Complemental strand, 78415 - 78364
Alignment:
Q  228 attgcgttaccaccgtcattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  78415 attgcgttaccgccgtcgttgtcgaatcttcatgatgtgtttcatgtgtctc 78364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 120 - 279
Target Start/End: Complemental strand, 22868 - 22716
Alignment:
Q  120 gtgattcatgtaaccgttgttgtacgtgctttgaagtgtcaaaagttgacgccgcgttttgttggactgtttgagattgttgagaaggttggagctgtag 219  Q
    |||| |||||| |||| |||||   ||||||||||||||   |||||||| || ||||||||||||| ||||||  |  ||||||||||||| | |||||    
T  22868 gtgaatcatgtgaccggtgttggttgtgctttgaagtgtaggaagttgactcctcgttttgttggaccgtttgatgtcattgagaaggttggggttgtag 22769  T
Q  220 cgtattcgattgcgttaccaccgtcattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
           |||||| |||||||| ||  |||||||||||||| ||||||||||||||||||    
T  22768 -------gattgcattaccaccatctctgtcgaatcttcataatgtgtttcatgtgtctc 22716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1068 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1068
Description:

Target: scaffold1068; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 279
Target Start/End: Original strand, 1007 - 1058
Alignment:
Q  228 attgcgttaccaccgtcattgtcgaatcttcatgatgtgtttcatgtgtctc 279  Q
    ||||||||||||||| | |||||||| || ||| ||||||||||||||||||    
T  1007 attgcgttaccaccgacgttgtcgaacctgcataatgtgtttcatgtgtctc 1058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University