View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20925_high_12 (Length: 239)

Name: NF20925_high_12
Description: NF20925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20925_high_12
NF20925_high_12
[»] chr5 (7 HSPs)
chr5 (1-222)||(1048788-1049005)
chr5 (11-58)||(2226970-2227017)
chr5 (11-58)||(15068410-15068457)
chr5 (11-58)||(23780774-23780821)
chr5 (11-58)||(23867727-23867774)
chr5 (11-58)||(30265877-30265924)
chr5 (12-58)||(36103699-36103745)
[»] chr7 (6 HSPs)
chr7 (11-58)||(7760054-7760101)
chr7 (11-51)||(13852265-13852305)
chr7 (11-58)||(10069143-10069190)
chr7 (11-58)||(18673276-18673323)
chr7 (11-58)||(45898146-45898193)
chr7 (11-54)||(47903201-47903244)
[»] chr8 (3 HSPs)
chr8 (11-58)||(10661103-10661150)
chr8 (11-58)||(14549173-14549220)
chr8 (11-58)||(33068215-33068262)
[»] chr6 (4 HSPs)
chr6 (11-58)||(35040296-35040343)
chr6 (17-58)||(10391114-10391155)
chr6 (11-56)||(10590802-10590847)
chr6 (29-58)||(19135217-19135246)
[»] chr4 (4 HSPs)
chr4 (11-54)||(40806904-40806947)
chr4 (11-58)||(40900169-40900216)
chr4 (11-58)||(43630527-43630574)
chr4 (15-52)||(41260228-41260265)
[»] chr2 (3 HSPs)
chr2 (11-58)||(44979855-44979902)
chr2 (12-58)||(42785716-42785762)
chr2 (11-47)||(44035266-44035302)
[»] chr1 (4 HSPs)
chr1 (11-58)||(16529586-16529633)
chr1 (15-58)||(27507581-27507624)
chr1 (11-58)||(51252501-51252548)
chr1 (1-58)||(32953988-32954045)
[»] scaffold0059 (1 HSPs)
scaffold0059 (11-58)||(69626-69673)
[»] scaffold0029 (1 HSPs)
scaffold0029 (11-58)||(40671-40718)
[»] chr3 (1 HSPs)
chr3 (11-58)||(39097895-39097942)


Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 1048788 - 1049005
Alignment:
Q  1 tttatcttatgtttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaaccgctagtataaatatagatccaccaaacgaactcccttcaac 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1048788 tttatcttatgtttggatgatttttattctcaaagccgaaccaaaccaaaccgcgaaccgctggtataaatatagatccaccaaacgaactcccttcaac 1048887  T
Q  101 ttgaaccgcatatttttcatcaaannnnnnnnnnnnnnnnnnnnttgaacttcatattttgccttttgaactgttagtgatcattgtaatttatttaaat 200  Q
    ||||||||||||||||||||||||                    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1048888 ttgaaccgcatatttttcatcaaa----agagggagaaaaaaaattgaacttcatattttgccttttgaactgttagtgatcattgtaatttatttaaat 1048983  T
Q  201 gggtatcaaaatggaaggtact 222  Q
    ||||||||||||||||||||||    
T  1048984 gggtatcaaaatggaaggtact 1049005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 2226970 - 2227017
Alignment:
Q  11 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 58  Q
    ||||||||| ||||||| ||||||||||||||||||||| ||||||||    
T  2226970 gtttggatgttttttatgctcaaaaccgaaccaaaccactccgcgaac 2227017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 15068457 - 15068410
Alignment:
Q  11 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 58  Q
    |||||||||||| |||| || |||||||||||||||| ||||||||||    
T  15068457 gtttggatgattattatgcttaaaaccgaaccaaaccgcaccgcgaac 15068410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 23780821 - 23780774
Alignment:
Q  11 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 58  Q
    |||||||||| |||||| || |||||||||||||||| ||||||||||    
T  23780821 gtttggatgacttttatgcttaaaaccgaaccaaaccgcaccgcgaac 23780774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 23867774 - 23867727
Alignment:
Q  11 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 58  Q
    |||||||||| |||||| || |||||||||||||||| ||||||||||    
T  23867774 gtttggatgacttttatgcttaaaaccgaaccaaaccgcaccgcgaac 23867727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 30265877 - 30265924
Alignment:
Q  11 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 58  Q
    |||| |||||||||||| ||||||||| ||||||||| ||||||||||    
T  30265877 gtttagatgatttttatgctcaaaaccaaaccaaaccgcaccgcgaac 30265924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 36103699 - 36103745
Alignment:
Q  12 tttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 58  Q
    ||||||||  |||||| ||||||||||||||||||| ||||||||||    
T  36103699 tttggatgtattttatgctcaaaaccgaaccaaaccgcaccgcgaac 36103745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 7760101 - 7760054
Alignment:
Q  11 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 58  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  7760101 gtttggatgatttttatgctcaaaatcgaaccaaaccacaccgcgaac 7760054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 13852305 - 13852265
Alignment:
Q  11 gtttggatgatttttattctcaaaaccgaaccaaaccacac 51  Q
    |||||||||| |||||| |||||||||||||||||||||||    
T  13852305 gtttggatgacttttatgctcaaaaccgaaccaaaccacac 13852265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 10069190 - 10069143
Alignment:
Q  11 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 58  Q
    |||| ||||| |||||| ||||||||||||||||||| ||||||||||    
T  10069190 gtttagatgacttttatgctcaaaaccgaaccaaaccgcaccgcgaac 10069143  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 18673276 - 18673323
Alignment:
Q  11 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 58  Q
    |||||||||| |||||| ||||||||||||||||| | ||||||||||    
T  18673276 gtttggatgacttttatgctcaaaaccgaaccaaatcgcaccgcgaac 18673323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 45898146 - 45898193
Alignment:
Q  11 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 58  Q
    |||||||||| |||||| | ||||||||||||||||| ||||||||||    
T  45898146 gtttggatgacttttatgcacaaaaccgaaccaaaccgcaccgcgaac 45898193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 47903244 - 47903201
Alignment:
Q  11 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgc 54  Q
    ||||||||||||||||| || |||||||||||||||| ||||||    
T  47903244 gtttggatgatttttatgcttaaaaccgaaccaaaccgcaccgc 47903201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 10661150 - 10661103
Alignment:
Q  11 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 58  Q
    |||||||||| |||||| ||||||||||||||||||| ||||||||||    
T  10661150 gtttggatgacttttatgctcaaaaccgaaccaaaccgcaccgcgaac 10661103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 14549220 - 14549173
Alignment:
Q  11 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 58  Q
    |||||||||| |||||| |||||||||||| |||||||||||||||||    
T  14549220 gtttggatgacttttatgctcaaaaccgaatcaaaccacaccgcgaac 14549173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 33068262 - 33068215
Alignment:
Q  11 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 58  Q
    |||||||||| |||||| ||||||||||||||||||| |||| |||||    
T  33068262 gtttggatgacttttatgctcaaaaccgaaccaaaccgcaccacgaac 33068215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 35040296 - 35040343
Alignment:
Q  11 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 58  Q
    |||||||||| |||||| ||||||||||||||||||| ||||||||||    
T  35040296 gtttggatgacttttatgctcaaaaccgaaccaaaccgcaccgcgaac 35040343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 10391114 - 10391155
Alignment:
Q  17 atgatttttattctcaaaaccgaaccaaaccacaccgcgaac 58  Q
    |||| |||||| ||||||||||||||||||||||||||||||    
T  10391114 atgacttttatgctcaaaaccgaaccaaaccacaccgcgaac 10391155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 10590847 - 10590802
Alignment:
Q  11 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgcga 56  Q
    |||||||||| |||||| ||||||||||||||||||| ||||||||    
T  10590847 gtttggatgacttttatgctcaaaaccgaaccaaaccgcaccgcga 10590802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 19135217 - 19135246
Alignment:
Q  29 ctcaaaaccgaaccaaaccacaccgcgaac 58  Q
    ||||||||||||||||||||||||||||||    
T  19135217 ctcaaaaccgaaccaaaccacaccgcgaac 19135246  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 40806904 - 40806947
Alignment:
Q  11 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgc 54  Q
    |||||||||| |||||| ||||||||||||||||||||||||||    
T  40806904 gtttggatgacttttatgctcaaaaccgaaccaaaccacaccgc 40806947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 40900169 - 40900216
Alignment:
Q  11 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 58  Q
    |||||||||| |||||| ||||||||||||||||||| ||||||||||    
T  40900169 gtttggatgacttttatgctcaaaaccgaaccaaaccgcaccgcgaac 40900216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 43630574 - 43630527
Alignment:
Q  11 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 58  Q
    |||||||||| |||||| ||||||| ||||||||||| ||||||||||    
T  43630574 gtttggatgacttttatactcaaaatcgaaccaaaccgcaccgcgaac 43630527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 41260265 - 41260228
Alignment:
Q  15 ggatgatttttattctcaaaaccgaaccaaaccacacc 52  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  41260265 ggatgatttttatgctcaaaaccgaaccaaaccgcacc 41260228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 44979855 - 44979902
Alignment:
Q  11 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 58  Q
    |||||||||| |||||| ||||||||||||||||||| ||||||||||    
T  44979855 gtttggatgacttttatgctcaaaaccgaaccaaaccgcaccgcgaac 44979902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 42785716 - 42785762
Alignment:
Q  12 tttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 58  Q
    ||||||||| |||||| ||||||| ||||||||||| ||||||||||    
T  42785716 tttggatgacttttatgctcaaaatcgaaccaaaccgcaccgcgaac 42785762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 44035302 - 44035266
Alignment:
Q  11 gtttggatgatttttattctcaaaaccgaaccaaacc 47  Q
    |||||||||| |||||| |||||||||||||||||||    
T  44035302 gtttggatgacttttatgctcaaaaccgaaccaaacc 44035266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 16529586 - 16529633
Alignment:
Q  11 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 58  Q
    |||||||||| |||||| ||||||||||||||||||| ||||||||||    
T  16529586 gtttggatgacttttatgctcaaaaccgaaccaaaccgcaccgcgaac 16529633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 27507581 - 27507624
Alignment:
Q  15 ggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 58  Q
    |||||| |||||||||||||||||||||||||| ||||||||||    
T  27507581 ggatgacttttattctcaaaaccgaaccaaaccgcaccgcgaac 27507624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 51252501 - 51252548
Alignment:
Q  11 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 58  Q
    |||||||||| |||||| ||||||| ||||||||||| ||||||||||    
T  51252501 gtttggatgacttttatgctcaaaatcgaaccaaaccgcaccgcgaac 51252548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 32954045 - 32953988
Alignment:
Q  1 tttatcttatgtttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 58  Q
    ||||||| | |||||||||| ||||||  |||||||||||||||||| |||| |||||    
T  32954045 tttatctcaggtttggatgacttttatgttcaaaaccgaaccaaaccgcaccacgaac 32953988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 69626 - 69673
Alignment:
Q  11 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 58  Q
    |||||||||| |||||| ||||||| ||||||||||| ||||||||||    
T  69626 gtttggatgacttttatgctcaaaatcgaaccaaaccgcaccgcgaac 69673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 40671 - 40718
Alignment:
Q  11 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 58  Q
    |||||||||| | |||| ||||||||||||||||||| ||||||||||    
T  40671 gtttggatgactattatgctcaaaaccgaaccaaaccgcaccgcgaac 40718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 39097942 - 39097895
Alignment:
Q  11 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 58  Q
    |||||||||| |||||| ||||||| |||||||||||| |||||||||    
T  39097942 gtttggatgacttttatgctcaaaatcgaaccaaaccaaaccgcgaac 39097895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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