View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20925_high_4 (Length: 383)
Name: NF20925_high_4
Description: NF20925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20925_high_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 7 - 383
Target Start/End: Complemental strand, 34898722 - 34898345
Alignment:
| Q |
7 |
ttacttgaccaaaaaa-gaaactattgttgtttctgaacggaagttaatttctcttcgttcgacaatcaaggaactatttcaattcgaacccgttacact |
105 |
Q |
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| T |
34898722 |
ttacttgaccaaaaaaagaaactattgttgtttctgaacggaagttaatttcccttcgttcgacaatcaaggaactatttcaattcgaacccgttacact |
34898623 |
T |
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| Q |
106 |
tcatatgcttcaatgtttatctttgctcttggctattgatactagttcaacatttttcactgtgattatatgatctttattttgaccattccttatttta |
205 |
Q |
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| T |
34898622 |
tcatatgcttctatgtttatctttgctcttggctattgatactagttcaacatttttcactgtgattatatgatctttattttgaccattccttatttta |
34898523 |
T |
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| Q |
206 |
tagaggcactggatgtcataatttatttgctcttgaatttcatttgattgttccctcatatgttggcttggcatacttcttggtgcactttcagtatctt |
305 |
Q |
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| T |
34898522 |
tagaggcattggatgtcataatttatttgctcttgaatttcatttgattgttccctcatatgttggcttggcatacttcttggtgcactttcagtatctt |
34898423 |
T |
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| Q |
306 |
tagagtttgaaactgtcgttctaagaaatttttgttgccggtcttaaacatggcagtgaatggtgtgaagtaaatagt |
383 |
Q |
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| T |
34898422 |
tagagtttgaaactgtcgttctaagaaatttttgttgccggtcttaaacatggcagtgaatggtgtgaagtaaatagt |
34898345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 109 - 211
Target Start/End: Original strand, 46115140 - 46115242
Alignment:
| Q |
109 |
tatgcttcaatgtttatctttgctcttggctattgatactagttcaacatttttcactgtgattatatgatctttattttgaccattccttattttatag |
208 |
Q |
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| T |
46115140 |
tatgcttccatgtttatctctgctcttggctacagatactgattcaacatttttcactgtgattgtatgatctttattttgaacattccttattttatag |
46115239 |
T |
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| Q |
209 |
agg |
211 |
Q |
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||| |
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| T |
46115240 |
agg |
46115242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 218 - 383
Target Start/End: Original strand, 46115291 - 46115470
Alignment:
| Q |
218 |
atgtcataatttatttgctcttgaatttcatttgattgttccctcat---------atgttggcttggcatac-----ttcttggtgcactttcagtatc |
303 |
Q |
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| T |
46115291 |
atgtcataatttacttgctcttgaatttcatttgattgttctctaatatgttggggatgttggcttggcatacttcttttcttgatgcactttcagtaac |
46115390 |
T |
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| Q |
304 |
tttagagtttgaaactgtcgttctaagaaatttttgttgccggtcttaaacatggcagtgaatggtgtgaagtaaatagt |
383 |
Q |
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| T |
46115391 |
tatagattttgaaactctcgctctaaggaatttctgttgctgatcttaaatatggaagttaataatgtgatttaaatagt |
46115470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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