View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20925_low_11 (Length: 250)

Name: NF20925_low_11
Description: NF20925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20925_low_11
NF20925_low_11
[»] chr5 (8 HSPs)
chr5 (145-241)||(1048506-1048602)
chr5 (1-73)||(1048679-1048751)
chr5 (152-235)||(1042730-1042814)
chr5 (18-71)||(26690304-26690357)
chr5 (18-71)||(26960036-26960089)
chr5 (11-64)||(2423314-2423367)
chr5 (11-72)||(23623513-23623574)
chr5 (11-59)||(6633815-6633863)
[»] chr2 (3 HSPs)
chr2 (11-72)||(1331497-1331558)
chr2 (11-64)||(1537084-1537137)
chr2 (11-72)||(27301013-27301074)
[»] chr8 (1 HSPs)
chr8 (12-72)||(8036096-8036156)
[»] chr7 (2 HSPs)
chr7 (11-71)||(40849369-40849429)
chr7 (11-64)||(29628724-29628777)
[»] chr4 (4 HSPs)
chr4 (11-49)||(3666613-3666651)
chr4 (11-60)||(3999265-3999314)
chr4 (11-64)||(48292949-48293002)
chr4 (11-72)||(48338849-48338910)
[»] chr3 (1 HSPs)
chr3 (11-73)||(52632637-52632699)
[»] chr1 (1 HSPs)
chr1 (18-72)||(24630459-24630513)
[»] scaffold0210 (2 HSPs)
scaffold0210 (11-64)||(18919-18971)
scaffold0210 (11-64)||(26811-26863)
[»] scaffold0204 (1 HSPs)
scaffold0204 (11-72)||(26371-26432)


Alignment Details
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 145 - 241
Target Start/End: Complemental strand, 1048602 - 1048506
Alignment:
Q  145 cttactttatatgatatgttccggaagtagatattcttttttgtcttattgataagtaagttgtgaaaagtcaaatctccacgtttgtgcttcatct 241  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1048602 cttactttatatgatatgttccggaagtggatattcttttttgtcttattgataagtaagttgtgaaaagtcaaatctccacgtttgtgcttcatct 1048506  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 1048751 - 1048679
Alignment:
Q  1 aaataaaatccaaaccaaaccaaaccatgtagttaagtaagaaagtgatcaaaatacatccaaattaaatgca 73  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1048751 aaataaaatccaaaccaaaccaaaccatgtagttaagtaagaaagtgatcaaaatacatccaaatcaaatgca 1048679  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 1042814 - 1042730
Alignment:
Q  152 tatatgatatgttccggaagtagatattcttttttgtcttattgataa-gtaagttgtgaaaagtcaaatctccacgtttgtgct 235  Q
    |||||| |||||||  ||||| || || |||||||||||||||||||| ||||| |||||||||||||||| | |||||||||||    
T  1042814 tatatggtatgttctagaagtggaaatacttttttgtcttattgataaagtaaggtgtgaaaagtcaaatcccaacgtttgtgct 1042730  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 26690304 - 26690357
Alignment:
Q  18 aaccaaaccatgtagttaagtaagaaagtgatcaaaatacatccaaattaaatg 71  Q
    ||||||||||||  ||| ||||| ||||||||| ||||||||||||||||||||    
T  26690304 aaccaaaccatgcggttgagtaaaaaagtgatctaaatacatccaaattaaatg 26690357  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 26960036 - 26960089
Alignment:
Q  18 aaccaaaccatgtagttaagtaagaaagtgatcaaaatacatccaaattaaatg 71  Q
    ||||||||||||  ||| ||||| ||||||||| ||||||||||||||||||||    
T  26960036 aaccaaaccatgcggttgagtaaaaaagtgatctaaatacatccaaattaaatg 26960089  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 2423314 - 2423367
Alignment:
Q  11 caaaccaaaccaaaccatgtagttaagtaagaaagtgatcaaaatacatccaaa 64  Q
    |||| ||||||||||||||| ||| ||  | |||||||||||||||||||||||    
T  2423314 caaatcaaaccaaaccatgtggttgagggaaaaagtgatcaaaatacatccaaa 2423367  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 23623513 - 23623574
Alignment:
Q  11 caaaccaaaccaaaccatgtagttaagtaagaaagtgatcaaaatacatccaaattaaatgc 72  Q
    |||||||||||||||||||  ||| ||||| |||||||||  ||||| |||||| |||||||    
T  23623513 caaaccaaaccaaaccatgcggttgagtaaaaaagtgatccgaatacttccaaactaaatgc 23623574  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 6633815 - 6633863
Alignment:
Q  11 caaaccaaaccaaaccatgtagttaagtaagaaagtgatcaaaatacat 59  Q
    |||||||||||||||||||||||| ||| | |||||||||  |||||||    
T  6633815 caaaccaaaccaaaccatgtagttgagtgaaaaagtgatcggaatacat 6633863  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 1331497 - 1331558
Alignment:
Q  11 caaaccaaaccaaaccatgtagttaagtaagaaagtgatcaaaatacatccaaattaaatgc 72  Q
    |||||||||||||||||||| ||| || || |||||||||  ||||||||||||| ||||||    
T  1331497 caaaccaaaccaaaccatgtggttgaggaaaaaagtgatccgaatacatccaaatcaaatgc 1331558  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 1537084 - 1537137
Alignment:
Q  11 caaaccaaaccaaaccatgtagttaagtaagaaagtgatcaaaatacatccaaa 64  Q
    |||||||||||||| || |||||| ||||| ||||| ||| |||||||||||||    
T  1537084 caaaccaaaccaaatcaagtagttgagtaaaaaagtaatccaaatacatccaaa 1537137  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 27301074 - 27301013
Alignment:
Q  11 caaaccaaaccaaaccatgtagttaagtaagaaagtgatcaaaatacatccaaattaaatgc 72  Q
    |||||||||||||||||||  ||| || || |||||||||  ||||||||||||| ||||||    
T  27301074 caaaccaaaccaaaccatgcggttgaggaaaaaagtgatccgaatacatccaaatcaaatgc 27301013  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 8036096 - 8036156
Alignment:
Q  12 aaaccaaaccaaaccatgtagttaagtaagaaagtgatcaaaatacatccaaattaaatgc 72  Q
    ||||||||||||||||||| ||| ||||||||| |||||  | |||||||||| |||||||    
T  8036096 aaaccaaaccaaaccatgtggttgagtaagaaaatgatccgattacatccaaactaaatgc 8036156  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 40849369 - 40849429
Alignment:
Q  11 caaaccaaaccaaaccatgtagttaagtaagaaagtgatcaaaatacatccaaattaaatg 71  Q
    |||||||||||||||||||  ||| ||||| |||||||||  ||||||||||||| |||||    
T  40849369 caaaccaaaccaaaccatgcggttgagtaaaaaagtgatccgaatacatccaaatcaaatg 40849429  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 29628724 - 29628777
Alignment:
Q  11 caaaccaaaccaaaccatgtagttaagtaagaaagtgatcaaaatacatccaaa 64  Q
    |||||||||||||||||||  |||||| || |||||||||  ||||||||||||    
T  29628724 caaaccaaaccaaaccatgcggttaaggaaaaaagtgatccgaatacatccaaa 29628777  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 3666651 - 3666613
Alignment:
Q  11 caaaccaaaccaaaccatgtagttaagtaagaaagtgat 49  Q
    ||||||||||||||||||| |||| ||||||||||||||    
T  3666651 caaaccaaaccaaaccatgcagttgagtaagaaagtgat 3666613  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 3999265 - 3999314
Alignment:
Q  11 caaaccaaaccaaaccatgtagttaagtaagaaagtgatcaaaatacatc 60  Q
    |||||| ||||||||||||| ||| ||||||||||||||  |||||||||    
T  3999265 caaaccgaaccaaaccatgtggttgagtaagaaagtgattcaaatacatc 3999314  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 48293002 - 48292949
Alignment:
Q  11 caaaccaaaccaaaccatgtagttaagtaagaaagtgatcaaaatacatccaaa 64  Q
    |||||||||||||||||||| ||| || || |||||||||  ||||||||||||    
T  48293002 caaaccaaaccaaaccatgtggttgaggaaaaaagtgatccgaatacatccaaa 48292949  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 48338849 - 48338910
Alignment:
Q  11 caaaccaaaccaaaccatgtagttaagtaagaaagtgatcaaaatacatccaaattaaatgc 72  Q
    |||||||||||||||||||  ||| || || |||||||||  |||||||||||| |||||||    
T  48338849 caaaccaaaccaaaccatgcggttgagcaaaaaagtgatccgaatacatccaaactaaatgc 48338910  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 52632637 - 52632699
Alignment:
Q  11 caaaccaaaccaaaccatgtagttaagtaagaaagtgatcaaaatacatccaaattaaatgca 73  Q
    ||||||||||||||||||| |||| ||||| ||||||||   ||||||||||||  |||||||    
T  52632637 caaaccaaaccaaaccatgcagttgagtaaaaaagtgatatgaatacatccaaaccaaatgca 52632699  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 24630459 - 24630513
Alignment:
Q  18 aaccaaaccatgtagttaagtaagaaagtgatcaaaatacatccaaattaaatgc 72  Q
    ||||||||||||  ||| ||||| ||||||||| |||||||| ||||||||||||    
T  24630459 aaccaaaccatgcggttgagtaaaaaagtgatccaaatacattcaaattaaatgc 24630513  T

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Target: scaffold0210 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 18971 - 18919
Alignment:
Q  11 caaaccaaaccaaaccatgtagttaagtaagaaagtgatcaaaatacatccaaa 64  Q
    |||||||||||||||||||||||| ||||| |||  |||| |||||||||||||    
T  18971 caaaccaaaccaaaccatgtagttgagtaa-aaaacgatccaaatacatccaaa 18919  T

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Target: scaffold0210; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 26863 - 26811
Alignment:
Q  11 caaaccaaaccaaaccatgtagttaagtaagaaagtgatcaaaatacatccaaa 64  Q
    |||||||||||||||||||||||| ||||| |||  |||| |||||||||||||    
T  26863 caaaccaaaccaaaccatgtagttgagtaa-aaaacgatccaaatacatccaaa 26811  T

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Target: scaffold0204 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 26371 - 26432
Alignment:
Q  11 caaaccaaaccaaaccatgtagttaagtaagaaagtgatcaaaatacatccaaattaaatgc 72  Q
    |||||||||||||||||||  ||| || || |||||||||  |||||||||||| |||||||    
T  26371 caaaccaaaccaaaccatgcggttgagcaaaaaagtgatccgaatacatccaaactaaatgc 26432  T

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