View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20925_low_12 (Length: 242)
Name: NF20925_low_12
Description: NF20925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20925_low_12 |
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| [»] scaffold0008 (6 HSPs) |
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Alignment Details
Target: scaffold0008 (Bit Score: 226; Significance: 1e-125; HSPs: 6)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 5 - 242
Target Start/End: Complemental strand, 70333 - 70096
Alignment:
| Q |
5 |
cctcctacaatatgccaatacttttgttaaaataaggatggttacccatctagtcctgggaactttaaagggtgcatctggaaaattacttattctaatg |
104 |
Q |
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| T |
70333 |
cctcctacaatatgccaatacttttgttaaaatacggatggttacccatctagtcctgggaactttaaagggtgcatctggaaaattacttattctaatg |
70234 |
T |
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| Q |
105 |
attggttattgaaacaatccccacacaccttcctgtgattttcattaaagttccctttcactacctcacacacatcttcaattgcacttggtttagagga |
204 |
Q |
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| T |
70233 |
attggttattgaaacaatccccacacaccttcctgtgattttcattaaagttccctttcactacctcacacacatcttcaattgcacttggtctagagga |
70134 |
T |
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| Q |
205 |
agcatgcatttctgtgaaataacttgtgagaatatgct |
242 |
Q |
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| T |
70133 |
aacatgcatttctgtgaaataacttgtgagaatatgct |
70096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 5 - 242
Target Start/End: Complemental strand, 78176 - 77939
Alignment:
| Q |
5 |
cctcctacaatatgccaatacttttgttaaaataaggatggttacccatctagtcctgggaactttaaagggtgcatctggaaaattacttattctaatg |
104 |
Q |
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| T |
78176 |
cctcctacaatatgccaatacttttgttaaaatacggatggttacccatctagtcctgggaactttaaagggtgcatctggaaaattacttattctaatg |
78077 |
T |
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| Q |
105 |
attggttattgaaacaatccccacacaccttcctgtgattttcattaaagttccctttcactacctcacacacatcttcaattgcacttggtttagagga |
204 |
Q |
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| T |
78076 |
attggttattgaaacaatccccacacaccttcctgtgattttcattaaagttccctttcactacctcacacacatcttcaattgcacttggtctagagga |
77977 |
T |
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| Q |
205 |
agcatgcatttctgtgaaataacttgtgagaatatgct |
242 |
Q |
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| T |
77976 |
aacatgcatttctgtgaaataacttgtgagaatatgct |
77939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 119
Target Start/End: Complemental strand, 69812 - 69698
Alignment:
| Q |
5 |
cctcctacaatatgccaatacttttgttaaaataaggatggttacccatctagtcctgggaactttaaagggtgcatctggaaaattacttattctaatg |
104 |
Q |
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|||||||||| ||||||||||||||| |||||||||| | || |||||||| |||||| | |||||||| ||||||| || |||||||| | ||||| | |
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| T |
69812 |
cctcctacaaaatgccaatacttttggtaaaataaggctagtaacccatctggtcctgaggactttaaatggtgcatttgaaaaattacgtcttctactt |
69713 |
T |
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| Q |
105 |
attggttattgaaac |
119 |
Q |
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| T |
69712 |
cttggttagtgaaac |
69698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 119
Target Start/End: Complemental strand, 77655 - 77541
Alignment:
| Q |
5 |
cctcctacaatatgccaatacttttgttaaaataaggatggttacccatctagtcctgggaactttaaagggtgcatctggaaaattacttattctaatg |
104 |
Q |
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| T |
77655 |
cctcctacaaaatgccaatacttttggtaaaataaggctagtaacccatctggtcctgaggactttaaatggtgcatttgaaaaattacgtcttctactt |
77556 |
T |
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| Q |
105 |
attggttattgaaac |
119 |
Q |
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| T |
77555 |
cttggttagtgaaac |
77541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 69695 - 69654
Alignment:
| Q |
155 |
ttccctttcactacctcacacacatcttcaattgcacttggt |
196 |
Q |
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| T |
69695 |
ttccctttcactacctcacacacatgtttaattgcacttggt |
69654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 77538 - 77497
Alignment:
| Q |
155 |
ttccctttcactacctcacacacatcttcaattgcacttggt |
196 |
Q |
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| T |
77538 |
ttccctttcactacctcacacacatgtttaattgcacttggt |
77497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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