View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20925_low_14 (Length: 226)

Name: NF20925_low_14
Description: NF20925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20925_low_14
NF20925_low_14
[»] chr6 (17 HSPs)
chr6 (132-210)||(21862241-21862319)
chr6 (132-210)||(21862144-21862222)
chr6 (132-211)||(28063539-28063618)
chr6 (76-208)||(28063633-28063771)
chr6 (125-209)||(21862044-21862128)
chr6 (102-159)||(21862145-21862201)
chr6 (132-211)||(13167485-13167565)
chr6 (102-161)||(21862242-21862300)
chr6 (106-209)||(13167368-13167470)
chr6 (102-145)||(28063575-28063617)
chr6 (162-200)||(10741529-10741567)
chr6 (106-148)||(21862056-21862098)
chr6 (76-138)||(21862246-21862308)
chr6 (132-165)||(13167579-13167612)
chr6 (100-171)||(13097901-13097973)
chr6 (41-112)||(13097903-13097975)
chr6 (76-128)||(21862149-21862201)
[»] chr3 (8 HSPs)
chr3 (121-211)||(46692055-46692145)
chr3 (132-205)||(46691967-46692041)
chr3 (132-209)||(42530736-42530813)
chr3 (102-148)||(42530737-42530783)
chr3 (102-210)||(50295558-50295667)
chr3 (60-149)||(50295546-50295636)
chr3 (102-161)||(46692075-46692133)
chr3 (101-184)||(50295526-50295610)
[»] chr7 (18 HSPs)
chr7 (132-212)||(15623094-15623174)
chr7 (132-212)||(15623187-15623267)
chr7 (132-200)||(15623013-15623081)
chr7 (132-211)||(44338471-44338550)
chr7 (106-211)||(21813824-21813930)
chr7 (132-209)||(44338287-44338364)
chr7 (132-209)||(44338379-44338456)
chr7 (102-148)||(44338380-44338426)
chr7 (91-205)||(11828572-11828688)
chr7 (60-149)||(11828598-11828688)
chr7 (74-147)||(21813822-21813896)
chr7 (106-148)||(44338292-44338334)
chr7 (106-148)||(46963840-46963882)
chr7 (102-150)||(15623033-15623080)
chr7 (106-209)||(46963810-46963913)
chr7 (102-149)||(15623127-15623173)
chr7 (102-149)||(15623220-15623266)
chr7 (102-149)||(44338472-44338518)
[»] chr2 (11 HSPs)
chr2 (132-211)||(1173293-1173372)
chr2 (132-211)||(1173386-1173465)
chr2 (35-179)||(1173541-1173687)
chr2 (56-211)||(1173479-1173635)
chr2 (76-211)||(38584093-38584234)
chr2 (106-148)||(8986221-8986263)
chr2 (102-154)||(1173413-1173464)
chr2 (106-209)||(8986190-8986294)
chr2 (102-161)||(1173313-1173371)
chr2 (105-135)||(32290651-32290681)
chr2 (125-198)||(38584168-38584246)
[»] chr1 (10 HSPs)
chr1 (132-219)||(15629932-15630019)
chr1 (137-209)||(15630034-15630107)
chr1 (106-161)||(15630052-15630107)
chr1 (102-168)||(19825087-19825153)
chr1 (75-138)||(15630044-15630108)
chr1 (125-194)||(19825091-19825161)
chr1 (106-149)||(2072389-2072432)
chr1 (102-149)||(2075919-2075966)
chr1 (161-199)||(19825117-19825155)
chr1 (102-138)||(15629952-15629988)
[»] chr5 (14 HSPs)
chr5 (132-202)||(24137046-24137116)
chr5 (106-211)||(9511782-9511888)
chr5 (75-149)||(9511781-9511856)
chr5 (132-209)||(24136891-24136969)
chr5 (132-199)||(9511777-9511845)
chr5 (106-211)||(11335381-11335485)
chr5 (102-161)||(24136892-24136951)
chr5 (39-118)||(9511776-9511856)
chr5 (102-149)||(24137047-24137093)
chr5 (161-211)||(24136983-24137033)
chr5 (106-148)||(24136813-24136855)
chr5 (76-138)||(24137051-24137113)
chr5 (132-161)||(24136984-24137013)
chr5 (102-138)||(24136985-24137021)
[»] chr4 (11 HSPs)
chr4 (106-200)||(54147687-54147782)
chr4 (132-209)||(16870748-16870825)
chr4 (102-198)||(42265397-42265492)
chr4 (106-148)||(16870659-16870701)
chr4 (60-149)||(54147671-54147761)
chr4 (163-209)||(54147869-54147915)
chr4 (106-209)||(16870628-16870731)
chr4 (101-199)||(54147651-54147750)
chr4 (76-112)||(24225514-24225551)
chr4 (132-199)||(42265396-42265462)
chr4 (102-138)||(54147869-54147905)
[»] chr8 (10 HSPs)
chr8 (132-211)||(20242148-20242227)
chr8 (132-209)||(20241964-20242041)
chr8 (132-209)||(20242056-20242133)
chr8 (102-148)||(20242057-20242103)
chr8 (132-209)||(20250934-20251011)
chr8 (102-148)||(20250964-20251010)
chr8 (132-209)||(20251026-20251103)
chr8 (106-148)||(20241969-20242011)
chr8 (106-148)||(20251056-20251098)
chr8 (102-149)||(20242149-20242195)
[»] scaffold0499 (1 HSPs)
scaffold0499 (100-199)||(7238-7335)


Alignment Details
Target: chr6 (Bit Score: 67; Significance: 6e-30; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 132 - 210
Target Start/End: Original strand, 21862241 - 21862319
Alignment:
Q  132 tttggttgtttggtgagtctagttctcacatttggttgttaggtgagtcgagtgctcacaatttggttttttctccccc 210  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  21862241 tttggttgtttggtgagtctagctctcacatttggttgtttggtgagtcgagtgctcacaatttggtttcttctccccc 21862319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 132 - 210
Target Start/End: Original strand, 21862144 - 21862222
Alignment:
Q  132 tttggttgtttggtgagtctagttctcacatttggttgttaggtgagtcgagtgctcacaatttggttttttctccccc 210  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||  ||||||||    
T  21862144 tttggttgtttggtgagtctagttctcacatttggttgtttggtgagtcgagtgctcaatatttggtttcctctccccc 21862222  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 132 - 211
Target Start/End: Complemental strand, 28063618 - 28063539
Alignment:
Q  132 tttggttgtttggtgagtctagttctcacatttggttgttaggtgagtcgagtgctcacaatttggttttttctccccct 211  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||| || | ||| ||||||| ||| ||| ||||||    
T  28063618 tttggttgtttggtgagtctagttctcacatttggttgtttggtaagttgaattctcccaatttgatttcttcaccccct 28063539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 76 - 208
Target Start/End: Complemental strand, 28063771 - 28063633
Alignment:
Q  76 ttgtttggtgaatcgagtgcttacaattggttgtttggtgagtcgagttctcacactttggttgtttggtgagt-------ctagttctcacatttggtt 168  Q
    ||||||| ||| |||| |||| ||||||||||||||| ||||| |||| |||||| || | |||||||||||||       | ||| |||||| ||||||    
T  28063771 ttgtttgttgagtcgattgctcacaattggttgtttgatgagt-gagtgctcacaattagtttgtttggtgagtggtgagccgagtgctcacaattggtt 28063673  T
Q  169 gttaggtgagtcgagtgctcacaatttggttttttctccc 208  Q
    ||| ||||||||  |||||||||||||||||| |||||||    
T  28063672 gtttggtgagtcaggtgctcacaatttggtttcttctccc 28063633  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 209
Target Start/End: Original strand, 21862044 - 21862128
Alignment:
Q  125 ctcacactttggttgtttggtgagtctagttctcaca-tttggttgttaggtgagtcgagtgctcacaatttggttttttctcccc 209  Q
    |||||| |||| |||||||||||||| | |||||||| |||||||||| | |||| || |||||||||||||||||| ||||||||    
T  21862044 ctcacaatttgcttgtttggtgagtcgaattctcacattttggttgtttgttgag-cgtgtgctcacaatttggtttcttctcccc 21862128  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 159
Target Start/End: Original strand, 21862145 - 21862201
Alignment:
Q  102 ttggttgtttggtgagtcgagttctcacactttggttgtttggtgagtctagttctca 159  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||| ||| ||||    
T  21862145 ttggttgtttggtgagtctagttctcaca-tttggttgtttggtgagtcgagtgctca 21862201  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 211
Target Start/End: Original strand, 13167485 - 13167565
Alignment:
Q  132 tttggttgtttggtgagtctagttctcacatttggttgtta-ggtgagtcgagtgctcacaatttggttttttctccccct 211  Q
    ||||||||| ||||||||  | |||||||||||  |||||  ||||||||||||||||||| |||||||| ||||||||||    
T  13167485 tttggttgtgtggtgagtaaaattctcacatttcattgttccggtgagtcgagtgctcacagtttggtttcttctccccct 13167565  T

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Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 21862242 - 21862300
Alignment:
Q  102 ttggttgtttggtgagtcgagttctcacactttggttgtttggtgagtctagttctcaca 161  Q
    |||||||||||||||||| || ||||||| ||||||||||||||||||| ||| ||||||    
T  21862242 ttggttgtttggtgagtctagctctcaca-tttggttgtttggtgagtcgagtgctcaca 21862300  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 209
Target Start/End: Original strand, 13167368 - 13167470
Alignment:
Q  106 ttgtttggtgagtcgagttctcacactttggttgtttggtgagtctagttctcacatttggttgttaggtgagtcgagtgctcacaatttggttttttct 205  Q
    |||||||||| ||| ||| ||| || |||| |||||||||||||| | |||||||| || |||||| | |||| ||  ||||||||||||||| | ||||    
T  13167368 ttgtttggtgggtcaagtgctcgcaatttgcttgtttggtgagtcgaattctcacactttgttgtttgctgag-cgtatgctcacaatttggtgtcttct 13167466  T
Q  206 cccc 209  Q
    ||||    
T  13167467 cccc 13167470  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 145
Target Start/End: Complemental strand, 28063617 - 28063575
Alignment:
Q  102 ttggttgtttggtgagtcgagttctcacactttggttgtttggt 145  Q
    |||||||||||||||||| |||||||||| ||||||||||||||    
T  28063617 ttggttgtttggtgagtctagttctcaca-tttggttgtttggt 28063575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 10741529 - 10741567
Alignment:
Q  162 tttggttgttaggtgagtcgagtgctcacaatttggttt 200  Q
    |||||||||| |||||||||||| |||||||||||||||    
T  10741529 tttggttgttcggtgagtcgagtactcacaatttggttt 10741567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 21862056 - 21862098
Alignment:
Q  106 ttgtttggtgagtcgagttctcacactttggttgtttggtgag 148  Q
    |||||||||||||||| |||||||| |||||||||||| ||||    
T  21862056 ttgtttggtgagtcgaattctcacattttggttgtttgttgag 21862098  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 138
Target Start/End: Original strand, 21862246 - 21862308
Alignment:
Q  76 ttgtttggtgaatcgagtgcttacaattggttgtttggtgagtcgagttctcacactttggtt 138  Q
    ||||||||||| || ||  || ||| |||||||||||||||||||||| |||||| |||||||    
T  21862246 ttgtttggtgagtctagctctcacatttggttgtttggtgagtcgagtgctcacaatttggtt 21862308  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 165
Target Start/End: Original strand, 13167579 - 13167612
Alignment:
Q  132 tttggttgtttggtgagtctagttctcacatttg 165  Q
    |||||||||||||||||||||||||| |||||||    
T  13167579 tttggttgtttggtgagtctagttcttacatttg 13167612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 171
Target Start/End: Original strand, 13097901 - 13097973
Alignment:
Q  100 aattggttgtttggtgagtcgagttctcacactttggttgtttggtgagtctagttctcac-atttggttgtt 171  Q
    ||||||||||||| |||||||||| ||||||  ||| ||||||| |||| | ||| ||||| |||||||||||    
T  13097901 aattggttgtttgatgagtcgagtgctcacaaattgtttgtttgttgagacaagtgctcacaatttggttgtt 13097973  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 112
Target Start/End: Original strand, 13097903 - 13097975
Alignment:
Q  41 ttggttgtttgataagtcgagtgctcacaattgatttgtttggtgaatcgagtgcttacaa-ttggttgtttg 112  Q
    ||||||||||||| |||||||||||||||| |  |||||||| |||  | |||||| |||| |||||||||||    
T  13097903 ttggttgtttgatgagtcgagtgctcacaaattgtttgtttgttgagacaagtgctcacaatttggttgtttg 13097975  T

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Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 21862149 - 21862201
Alignment:
Q  76 ttgtttggtgaatcgagtgcttacaattggttgtttggtgagtcgagttctca 128  Q
    ||||||||||| || ||| || ||| |||||||||||||||||||||| ||||    
T  21862149 ttgtttggtgagtctagttctcacatttggttgtttggtgagtcgagtgctca 21862201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 6e-30; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 121 - 211
Target Start/End: Complemental strand, 46692145 - 46692055
Alignment:
Q  121 agttctcacactttggttgtttggtgagtctagttctcacatttggttgttaggtgagtcgagtgctcacaatttggttttttctccccct 211  Q
    |||||||||| ||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||| ||||| ||||    
T  46692145 agttctcacaatttggttgtttggtgagtctaattctcacatttagttgtttggtgagtcgagtgctcacaatttggtttcttctctccct 46692055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 132 - 205
Target Start/End: Complemental strand, 46692041 - 46691967
Alignment:
Q  132 tttggttgtttggtgagtctagttctcacatttggttg-ttaggtgagtcgagtgctcacaatttggttttttct 205  Q
    |||||| ||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||| ||||    
T  46692041 tttggtggtttggtgagtctagttctcacatttggttgttttggtgagtcgagtgttcacaatttggtttcttct 46691967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 132 - 209
Target Start/End: Original strand, 42530736 - 42530813
Alignment:
Q  132 tttggttgtttggtgagtctagttctcaca-tttggttgttaggtgagtcgagtgctcacaatttggttttttctcccc 209  Q
    ||||||||||||||||||| |||||||||| |||||||||| |||||| || |||||||||||||||||| ||||||||    
T  42530736 tttggttgtttggtgagtcgagttctcacactttggttgtttggtgag-cgtgtgctcacaatttggtttcttctcccc 42530813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 102 - 148
Target Start/End: Original strand, 42530737 - 42530783
Alignment:
Q  102 ttggttgtttggtgagtcgagttctcacactttggttgtttggtgag 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  42530737 ttggttgtttggtgagtcgagttctcacactttggttgtttggtgag 42530783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 210
Target Start/End: Original strand, 50295558 - 50295667
Alignment:
Q  102 ttggttgtttggtgagtcgagttctcacactttggttgtttggtgagtctagttctcaca-tttggttgttaggtgagtcgagtgctcacaatttggttt 200  Q
    |||||||||| ||||||||||| ||||||||| |||||||||||||||  |||||||  | |||| ||||| |||||||  ||| |||| ||||||||||    
T  50295558 ttggttgtttcgtgagtcgagtgctcacacttgggttgtttggtgagttgagttctcgtactttgattgtttggtgagttaagtactcataatttggttt 50295657  T
Q  201 tttctccccc 210  Q
     |||||||||    
T  50295658 cttctccccc 50295667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 60 - 149
Target Start/End: Original strand, 50295546 - 50295636
Alignment:
Q  60 agtgctcacaattgatttgtttggtgaatcgagtgcttacaatt-ggttgtttggtgagtcgagttctcacactttggttgtttggtgagt 149  Q
    |||||||||||||   |||||| |||| ||||||||| ||| || ||||||||||||||| ||||||||  |||||| |||||||||||||    
T  50295546 agtgctcacaatttggttgtttcgtgagtcgagtgctcacacttgggttgtttggtgagttgagttctcgtactttgattgtttggtgagt 50295636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 161
Target Start/End: Complemental strand, 46692133 - 46692075
Alignment:
Q  102 ttggttgtttggtgagtcgagttctcacactttggttgtttggtgagtctagttctcaca 161  Q
    |||||||||||||||||| | |||||||| ||| ||||||||||||||| ||| ||||||    
T  46692133 ttggttgtttggtgagtctaattctcaca-tttagttgtttggtgagtcgagtgctcaca 46692075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 184
Target Start/End: Original strand, 50295526 - 50295610
Alignment:
Q  101 attggttgtttggtgagtcgagttctcacactttggttgtttggtgagtctagttctcaca-tttggttgttaggtgagtcgagt 184  Q
    |||| |||||| ||| ||| ||| |||||| ||||||||||| ||||||| ||| |||||| || ||||||| ||||||| ||||    
T  50295526 attgtttgtttagtgggtcaagtgctcacaatttggttgtttcgtgagtcgagtgctcacacttgggttgtttggtgagttgagt 50295610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 15623174 - 15623094
Alignment:
Q  132 tttggttgtttggtgagtctagttctcacatttggttgttaggtgagtcgagtgctcacaatttggttttttctcccccta 212  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||| |||||||||||    
T  15623174 tttggttgtttggtgagtctagttctcacatttggttgtttggtgagttgagtgctcacaattttgtttcttctcccccta 15623094  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 15623267 - 15623187
Alignment:
Q  132 tttggttgtttggtgagtctagttctcacatttggttgttaggtgagtcgagtgctcacaatttggttttttctcccccta 212  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||| |||| |||||||||||    
T  15623267 tttggttgtttggtgagtctagttctcacatttgattgtttggtgagttgagtgctcacaattttgtttcttctcccccta 15623187  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 132 - 200
Target Start/End: Complemental strand, 15623081 - 15623013
Alignment:
Q  132 tttggttgtttggtgagtctagttctcacatttggttgttaggtgagtcgagtgctcacaatttggttt 200  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||| |||||    
T  15623081 tttggttgtttggtgagtctagttctcacatttggttgtttggtgagtcgtgtgctcacgattcggttt 15623013  T

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Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 132 - 211
Target Start/End: Original strand, 44338471 - 44338550
Alignment:
Q  132 tttggttgtttggtgagtctagttctcacatttggttgttaggtgagtcgagtgctcacaatttggttttttctccccct 211  Q
    ||||||||||||||||||  |||||||||||||||||||  ||||||| | |||||||||||||||||| ||||||||||    
T  44338471 tttggttgtttggtgagtagagttctcacatttggttgtctggtgagtagtgtgctcacaatttggtttcttctccccct 44338550  T

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Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 106 - 211
Target Start/End: Original strand, 21813824 - 21813930
Alignment:
Q  106 ttgtttggtgagtcgagttctcacactttggttgtttggtgagtctagttctcac-atttggttgttaggtgagtcgagtgctcacaatttggttttttc 204  Q
    |||||||||||||| ||| |||||||||||||||||||||||||| ||| ||||| ||||||||| | |||||    ||| | |||||||||||||||||    
T  21813824 ttgtttggtgagtcaagtgctcacactttggttgtttggtgagtcgagtgctcacaatttggttgcttggtgaaataagtacccacaatttggttttttc 21813923  T
Q  205 tccccct 211  Q
    |||||||    
T  21813924 tccccct 21813930  T

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Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 209
Target Start/End: Original strand, 44338287 - 44338364
Alignment:
Q  132 tttggttgtttggtgagtctagttctcaca-tttggttgttaggtgagtcgagtgctcacaatttggttttttctcccc 209  Q
    |||| |||||||||||||| |||||||||| |||||||||| |||||| || |||||||||||||||||| ||||||||    
T  44338287 tttgcttgtttggtgagtcgagttctcacattttggttgtttggtgag-cgtgtgctcacaatttggtttcttctcccc 44338364  T

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Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 209
Target Start/End: Original strand, 44338379 - 44338456
Alignment:
Q  132 tttggttgtttggtgagtctagttctcaca-tttggttgttaggtgagtcgagtgctcacaatttggttttttctcccc 209  Q
    |||||| |||||||||||| |||||||||| |||||||||| |||||| || |||||||||||||||||| ||||||||    
T  44338379 tttggtggtttggtgagtcgagttctcacactttggttgtttggtgag-cgtgtgctcacaatttggtttcttctcccc 44338456  T

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Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 102 - 148
Target Start/End: Original strand, 44338380 - 44338426
Alignment:
Q  102 ttggttgtttggtgagtcgagttctcacactttggttgtttggtgag 148  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||    
T  44338380 ttggtggtttggtgagtcgagttctcacactttggttgtttggtgag 44338426  T

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Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 205
Target Start/End: Complemental strand, 11828688 - 11828572
Alignment:
Q  91 agtgcttacaattggtt-gtttggtgagtcgagttctcacactttggttgtttggtgagtctagttctcacattt-ggttgttaggtgagtcgagtgctc 188  Q
    |||||| |||||| ||| |||||||| ||| ||| |||||| ||||||||| |||||||||  || ||||||||| ||||||| |||||||  ||| |||    
T  11828688 agtgctcacaatttgttagtttggtgggtcaagtgctcacaatttggttgtctggtgagtcgggtgctcacattttggttgtttggtgagttaagtactc 11828589  T
Q  189 acaatttggttttttct 205  Q
    |||||||||||| ||||    
T  11828588 acaatttggtttcttct 11828572  T

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Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 60 - 149
Target Start/End: Complemental strand, 11828688 - 11828598
Alignment:
Q  60 agtgctcacaattgatttgtttggtgaatcgagtgcttacaatt-ggttgtttggtgagtcgagttctcacactttggttgtttggtgagt 149  Q
    |||||||||||||  || ||||||||  || |||||| |||||| |||||| |||||||||| || |||||| ||||||||||||||||||    
T  11828688 agtgctcacaatttgttagtttggtgggtcaagtgctcacaatttggttgtctggtgagtcgggtgctcacattttggttgtttggtgagt 11828598  T

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Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 74 - 147
Target Start/End: Original strand, 21813822 - 21813896
Alignment:
Q  74 atttgtttggtgaatcgagtgcttacaatt-ggttgtttggtgagtcgagttctcacactttggttgtttggtga 147  Q
    ||||||||||||| || |||||| ||| || |||||||||||||||||||| |||||| |||||||| |||||||    
T  21813822 atttgtttggtgagtcaagtgctcacactttggttgtttggtgagtcgagtgctcacaatttggttgcttggtga 21813896  T

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Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 44338292 - 44338334
Alignment:
Q  106 ttgtttggtgagtcgagttctcacactttggttgtttggtgag 148  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  44338292 ttgtttggtgagtcgagttctcacattttggttgtttggtgag 44338334  T

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Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 148
Target Start/End: Complemental strand, 46963882 - 46963840
Alignment:
Q  106 ttgtttggtgagtcgagttctcacactttggttgtttggtgag 148  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  46963882 ttgtttggtgagtcgatttctcacactttggttgtttggtgag 46963840  T

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Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 15623080 - 15623033
Alignment:
Q  102 ttggttgtttggtgagtcgagttctcacactttggttgtttggtgagtc 150  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||    
T  15623080 ttggttgtttggtgagtctagttctcaca-tttggttgtttggtgagtc 15623033  T

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Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 209
Target Start/End: Complemental strand, 46963913 - 46963810
Alignment:
Q  106 ttgtttggtgagtcgagttctcacactttggttgtttggtgagtctagttctcaca-tttggttgttaggtgagtcgagtgctcacaatttggttttttc 204  Q
    |||||||||| ||| ||  |||| | |||| |||||||||||||| | |||||||| |||||||||| |||||| |  |||||||||||||||||| |||    
T  46963913 ttgtttggtgggtcaagaactcataatttgcttgtttggtgagtcgatttctcacactttggttgtttggtgag-catgtgctcacaatttggtttcttc 46963815  T
Q  205 tcccc 209  Q
    |||||    
T  46963814 tcccc 46963810  T

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Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 149
Target Start/End: Complemental strand, 15623173 - 15623127
Alignment:
Q  102 ttggttgtttggtgagtcgagttctcacactttggttgtttggtgagt 149  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||    
T  15623173 ttggttgtttggtgagtctagttctcaca-tttggttgtttggtgagt 15623127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 149
Target Start/End: Complemental strand, 15623266 - 15623220
Alignment:
Q  102 ttggttgtttggtgagtcgagttctcacactttggttgtttggtgagt 149  Q
    |||||||||||||||||| |||||||||| |||| |||||||||||||    
T  15623266 ttggttgtttggtgagtctagttctcaca-tttgattgtttggtgagt 15623220  T

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Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 44338472 - 44338518
Alignment:
Q  102 ttggttgtttggtgagtcgagttctcacactttggttgtttggtgagt 149  Q
    ||||||||||||||||| ||||||||||| ||||||||| ||||||||    
T  44338472 ttggttgtttggtgagtagagttctcaca-tttggttgtctggtgagt 44338518  T

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Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 132 - 211
Target Start/End: Complemental strand, 1173372 - 1173293
Alignment:
Q  132 tttggttgtttggtgagtctagttctcacatttggttgttaggtgagtcgagtgctcacaatttggttttttctccccct 211  Q
    |||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||| ||||||||||    
T  1173372 tttggttgtttggtgagtctagttctcacatttgattgtttagtgagtcgagtgctcacaatttggtttcttctccccct 1173293  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 132 - 211
Target Start/End: Complemental strand, 1173465 - 1173386
Alignment:
Q  132 tttggttgtttggtgagtctagttctcacatttggttgttaggtgagtcgagtgctcacaatttggttttttctccccct 211  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||| ||||| ||||||||||||| ||||||||||    
T  1173465 tttggttgtttggtgagtctaattctcacatttggttgtttggtgagtctagtgcacacaatttggtttcttctccccct 1173386  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 35 - 179
Target Start/End: Complemental strand, 1173687 - 1173541
Alignment:
Q  35 gtttgtttggttgtttgataagtcgagtgctcacaattgatttgtttggtgaatcgagtgcttacaattggtt-gtttggtgagtcgagttctcacactt 133  Q
    ||||||||| ||||||| |  ||| |||||||| ||||  |||||||||||  ||||||||| | |||| ||| |||||||||||||||| |||| | ||    
T  1173687 gtttgtttgtttgtttggtgggtcaagtgctcataatttgtttgtttggtgggtcgagtgctcataatttgtttgtttggtgagtcgagtactcatattt 1173588  T
Q  134 tggttgtttggtgagtctagttctcacat-ttggttgttaggtgagt 179  Q
    ||||||||||||||||||||| ||||||| ||| ||||| |||||||    
T  1173587 tggttgtttggtgagtctagtgctcacatgttgtttgtttggtgagt 1173541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 56 - 211
Target Start/End: Complemental strand, 1173635 - 1173479
Alignment:
Q  56 gtcgagtgctcacaattgatttgtttggtgaatcgagtgcttacaatt-ggttgtttggtgagtcgagttctcacactttggttgtttggtgagtctagt 154  Q
    |||||||||||| ||||  |||||||||||| |||||| || | | || |||||||||||||||| ||| ||||||  ||| |||||||||||||  ||     
T  1173635 gtcgagtgctcataatttgtttgtttggtgagtcgagtactcatattttggttgtttggtgagtctagtgctcacatgttgtttgtttggtgagta-agc 1173537  T
Q  155 tctcaca-tttggttgttaggtgagtcgagtgctcacaatttggttttttctccccct 211  Q
     |||||| |||||||||| |||||||| ||||||||||||||||||| ||||| ||||    
T  1173536 gctcacactttggttgtttggtgagtctagtgctcacaatttggtttcttctcgccct 1173479  T

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Target: chr2; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 76 - 211
Target Start/End: Complemental strand, 38584234 - 38584093
Alignment:
Q  76 ttgtttggtgaatcgagtgcttacaatt-ggttgtttggt----gagtcgagttctcacactttggttgtttggtgagtctagttctcaca-tttggttg 169  Q
    ||||||||||| ||||||||| ||| || |||||||||||    ||||| ||| |||||| |||||| |||||||||||  ||| |||||| ||||||||    
T  38584234 ttgtttggtgagtcgagtgctcacattttggttgtttggttggtgagtcaagtgctcacaatttggtagtttggtgagttaagtgctcacaatttggttg 38584135  T
Q  170 ttaggtgagtcgagtgctcacaatttggttttttctccccct 211  Q
    || |||||||  | ||||||||||||| ||||||||||||||    
T  38584134 tttggtgagttaaatgctcacaatttgattttttctccccct 38584093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 8986221 - 8986263
Alignment:
Q  106 ttgtttggtgagtcgagttctcacactttggttgtttggtgag 148  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  8986221 ttgtttggtgagtcgatttctcacactttggttgtttggtgag 8986263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 102 - 154
Target Start/End: Complemental strand, 1173464 - 1173413
Alignment:
Q  102 ttggttgtttggtgagtcgagttctcacactttggttgtttggtgagtctagt 154  Q
    |||||||||||||||||| | |||||||| |||||||||||||||||||||||    
T  1173464 ttggttgtttggtgagtctaattctcaca-tttggttgtttggtgagtctagt 1173413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 209
Target Start/End: Original strand, 8986190 - 8986294
Alignment:
Q  106 ttgtttggtgagtcgagttctcacactttggttgtttggtgagtctagttctcaca-tttggttgttaggtgagtcgagtgctcacaatttggttt-ttt 203  Q
    |||||||||| ||| ||  |||| | |||| |||||||||||||| | |||||||| |||||||||| |||||| |  |||||||||||||||||| |||    
T  8986190 ttgtttggtgggtcaagaactcataatttgcttgtttggtgagtcgatttctcacactttggttgtttggtgag-catgtgctcacaatttggtttcttt 8986288  T
Q  204 ctcccc 209  Q
    ||||||    
T  8986289 ctcccc 8986294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 161
Target Start/End: Complemental strand, 1173371 - 1173313
Alignment:
Q  102 ttggttgtttggtgagtcgagttctcacactttggttgtttggtgagtctagttctcaca 161  Q
    |||||||||||||||||| |||||||||| |||| |||||| ||||||| ||| ||||||    
T  1173371 ttggttgtttggtgagtctagttctcaca-tttgattgtttagtgagtcgagtgctcaca 1173313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 135
Target Start/End: Original strand, 32290651 - 32290681
Alignment:
Q  105 gttgtttggtgagtcgagttctcacactttg 135  Q
    |||||||||||||||||||||||||||||||    
T  32290651 gttgtttggtgagtcgagttctcacactttg 32290681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 38584246 - 38584168
Alignment:
Q  125 ctcacactttggttgtttggtgagtctagttctcaca-tttggttgt----taggtgagtcgagtgctcacaatttggt 198  Q
    |||||| |||| |||||||||||||| ||| |||||| |||||||||    | |||||||| |||||||||||||||||    
T  38584246 ctcacaatttgcttgtttggtgagtcgagtgctcacattttggttgtttggttggtgagtcaagtgctcacaatttggt 38584168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 132 - 219
Target Start/End: Complemental strand, 15630019 - 15629932
Alignment:
Q  132 tttggttgtttggtgagtctagttctcacatttggttgttaggtgagtcgagtgctcacaatttggttttttctccccctatgcttct 219  Q
    ||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||| ||||    
T  15630019 tttggttgtttagtgagtctaattctcacatttggttgtttggtgagtcgagtgctcacaatttggtttcttctccccttatgattct 15629932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 137 - 209
Target Start/End: Complemental strand, 15630107 - 15630034
Alignment:
Q  137 ttgtttggtgagtctagttctcaca-tttggttgttaggtgagtcgagtgctcacaatttggttttttctcccc 209  Q
    |||||||||||||| ||| |||||| |||||||||| |||||||||||||||||||||||||||| ||||||||    
T  15630107 ttgtttggtgagtcgagtgctcacactttggttgtttggtgagtcgagtgctcacaatttggtttcttctcccc 15630034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 106 - 161
Target Start/End: Complemental strand, 15630107 - 15630052
Alignment:
Q  106 ttgtttggtgagtcgagttctcacactttggttgtttggtgagtctagttctcaca 161  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||    
T  15630107 ttgtttggtgagtcgagtgctcacactttggttgtttggtgagtcgagtgctcaca 15630052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 102 - 168
Target Start/End: Complemental strand, 19825153 - 19825087
Alignment:
Q  102 ttggttgtttggtgagtcgagttctcacactttggttgtttggtgagtctagttctcacatttggtt 168  Q
    |||||||||||| ||||||||| |||||| ||||||||||||||||||  ||| |||||| ||||||    
T  19825153 ttggttgtttggcgagtcgagtgctcacaatttggttgtttggtgagttaagtgctcacaattggtt 19825087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 138
Target Start/End: Complemental strand, 15630108 - 15630044
Alignment:
Q  75 tttgtttggtgaatcgagtgcttacaatt-ggttgtttggtgagtcgagttctcacactttggtt 138  Q
    |||||||||||| ||||||||| ||| || |||||||||||||||||||| |||||| |||||||    
T  15630108 tttgtttggtgagtcgagtgctcacactttggttgtttggtgagtcgagtgctcacaatttggtt 15630044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 125 - 194
Target Start/End: Complemental strand, 19825161 - 19825091
Alignment:
Q  125 ctcacactttggttgtttggtgagtctagttctcaca-tttggttgttaggtgagtcgagtgctcacaatt 194  Q
    |||||| ||||||||||||| ||||| ||| |||||| |||||||||| |||||||  |||||||||||||    
T  19825161 ctcacaatttggttgtttggcgagtcgagtgctcacaatttggttgtttggtgagttaagtgctcacaatt 19825091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 149
Target Start/End: Complemental strand, 2072432 - 2072389
Alignment:
Q  106 ttgtttggtgagtcgagttctcacactttggttgtttggtgagt 149  Q
    ||||||| |||||||||| |||| ||||||||||||||||||||    
T  2072432 ttgtttgatgagtcgagtgctcatactttggttgtttggtgagt 2072389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 149
Target Start/End: Complemental strand, 2075966 - 2075919
Alignment:
Q  102 ttggttgtttggtgagtcgagttctcacactttggttgtttggtgagt 149  Q
    |||||||||||  ||||||||| |||| ||||||||||||||||||||    
T  2075966 ttggttgtttgacgagtcgagtgctcatactttggttgtttggtgagt 2075919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 19825155 - 19825117
Alignment:
Q  161 atttggttgttaggtgagtcgagtgctcacaatttggtt 199  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  19825155 atttggttgtttggcgagtcgagtgctcacaatttggtt 19825117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 15629988 - 15629952
Alignment:
Q  102 ttggttgtttggtgagtcgagttctcacactttggtt 138  Q
    |||||||||||||||||||||| |||||| |||||||    
T  15629988 ttggttgtttggtgagtcgagtgctcacaatttggtt 15629952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 132 - 202
Target Start/End: Original strand, 24137046 - 24137116
Alignment:
Q  132 tttggttgtttggtgagtctagttctcacatttggttgttaggtgagtcgagtgctcacaatttggttttt 202  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  24137046 tttggttgtttggtgagtctagttctcacatttggttgtttggtgagttgagtgctcacaatttggttttt 24137116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 106 - 211
Target Start/End: Original strand, 9511782 - 9511888
Alignment:
Q  106 ttgtttggtgagtcgagttctcacactttggttgtttggtgagtctagttctcac-atttggttgttaggtgagtcgagtgctcacaatttggttttttc 204  Q
    |||||||||||||||||| ||||||||| |||||||||||||||| ||| ||||| ||||||||||| |||||||  | | ||||||||||| ||| ||     
T  9511782 ttgtttggtgagtcgagtgctcacacttcggttgtttggtgagtcgagtgctcacaatttggttgtttggtgagttaaatactcacaatttgatttctta 9511881  T
Q  205 tccccct 211  Q
    |||||||    
T  9511882 tccccct 9511888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 75 - 149
Target Start/End: Original strand, 9511781 - 9511856
Alignment:
Q  75 tttgtttggtgaatcgagtgcttacaatt-ggttgtttggtgagtcgagttctcacactttggttgtttggtgagt 149  Q
    |||||||||||| ||||||||| ||| || |||||||||||||||||||| |||||| ||||||||||||||||||    
T  9511781 tttgtttggtgagtcgagtgctcacacttcggttgtttggtgagtcgagtgctcacaatttggttgtttggtgagt 9511856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 209
Target Start/End: Original strand, 24136891 - 24136969
Alignment:
Q  132 tttggttgtttggtgagtctagttctcaca-tttggttgttaggtgagtcgagtgctcacaatttggttttttctcccc 209  Q
    ||||||||||||||||| | | |||||||| |||||||||| ||||||||||||||||||||||| |||| ||| ||||    
T  24136891 tttggttgtttggtgagccgacttctcacaatttggttgtttggtgagtcgagtgctcacaattttgtttcttcccccc 24136969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 199
Target Start/End: Original strand, 9511777 - 9511845
Alignment:
Q  132 tttggttgtttggtgagtctagttctcaca-tttggttgttaggtgagtcgagtgctcacaatttggtt 199  Q
    |||| |||||||||||||| ||| |||||| || ||||||| |||||||||||||||||||||||||||    
T  9511777 tttgtttgtttggtgagtcgagtgctcacacttcggttgtttggtgagtcgagtgctcacaatttggtt 9511845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 106 - 211
Target Start/End: Complemental strand, 11335485 - 11335381
Alignment:
Q  106 ttgtttggtgagtcgagttctcacactttggttgtttggtgagtctagttctcaca-tttggttgttaggtgagtcgagtgctcacaatttggttttttc 204  Q
    |||||||| | ||| ||| |||||| |||| |||||||||| |   ||| |||||| |||||||||| |||||||||| ||||||||||||||||| |||    
T  11335485 ttgtttggcgggtcaagtgctcacaatttgtttgtttggtggga--agtactcacactttggttgtttggtgagtcgaatgctcacaatttggtttcttc 11335388  T
Q  205 tccccct 211  Q
    |||||||    
T  11335387 tccccct 11335381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 24136892 - 24136951
Alignment:
Q  102 ttggttgtttggtgagtcgagttctcacactttggttgtttggtgagtctagttctcaca 161  Q
    |||||||||||||||| ||| |||||||| ||||||||||||||||||| ||| ||||||    
T  24136892 ttggttgtttggtgagccgacttctcacaatttggttgtttggtgagtcgagtgctcaca 24136951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 118
Target Start/End: Original strand, 9511776 - 9511856
Alignment:
Q  39 gtttggttgtttgataagtcgagtgctcacaattgatttgtttggtgaatcgagtgcttacaa-ttggttgtttggtgagt 118  Q
    ||||| ||||||| | ||||||||||||||| ||   ||||||||||| ||||||||| |||| |||||||||||||||||    
T  9511776 gtttgtttgtttggtgagtcgagtgctcacacttcggttgtttggtgagtcgagtgctcacaatttggttgtttggtgagt 9511856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 24137047 - 24137093
Alignment:
Q  102 ttggttgtttggtgagtcgagttctcacactttggttgtttggtgagt 149  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||    
T  24137047 ttggttgtttggtgagtctagttctcaca-tttggttgtttggtgagt 24137093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 24136983 - 24137033
Alignment:
Q  161 atttggttgttaggtgagtcgagtgctcacaatttggttttttctccccct 211  Q
    ||||||||||| |||||||| ||| ||||||||||||||| ||||||||||    
T  24136983 atttggttgtttggtgagtctagttctcacaatttggtttcttctccccct 24137033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 24136813 - 24136855
Alignment:
Q  106 ttgtttggtgagtcgagttctcacactttggttgtttggtgag 148  Q
    ||||| ||||||||||||||||||| | |||||||||||||||    
T  24136813 ttgttgggtgagtcgagttctcacattatggttgtttggtgag 24136855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 138
Target Start/End: Original strand, 24137051 - 24137113
Alignment:
Q  76 ttgtttggtgaatcgagtgcttacaattggttgtttggtgagtcgagttctcacactttggtt 138  Q
    ||||||||||| || ||| || ||| ||||||||||||||||| |||| |||||| |||||||    
T  24137051 ttgtttggtgagtctagttctcacatttggttgtttggtgagttgagtgctcacaatttggtt 24137113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 161
Target Start/End: Original strand, 24136984 - 24137013
Alignment:
Q  132 tttggttgtttggtgagtctagttctcaca 161  Q
    ||||||||||||||||||||||||||||||    
T  24136984 tttggttgtttggtgagtctagttctcaca 24137013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 24136985 - 24137021
Alignment:
Q  102 ttggttgtttggtgagtcgagttctcacactttggtt 138  Q
    |||||||||||||||||| |||||||||| |||||||    
T  24136985 ttggttgtttggtgagtctagttctcacaatttggtt 24137021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 106 - 200
Target Start/End: Original strand, 54147687 - 54147782
Alignment:
Q  106 ttgtttggtgagtcgagttctcacactttggttgtttggtgagtctagttctcaca-tttggttgttaggtgagtcgagtgctcacaatttggttt 200  Q
    ||||||||||||||  || |||||||||| |||||||||||||||||||||||||| |||||||||| |||||||   ||||||||||||||||||    
T  54147687 ttgtttggtgagtcaggtgctcacactttagttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggttt 54147782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 132 - 209
Target Start/End: Original strand, 16870748 - 16870825
Alignment:
Q  132 tttggttgtttggtgagtctagttctcacatttggttgttaggtgagtcgagtgctcacaatttggttttttctcccc 209  Q
    |||||||| || ||||||| |||||| |||||||||||||  |||||||||||||||| |||||||||| ||||||||    
T  16870748 tttggttgattagtgagtcaagttcttacatttggttgtttcgtgagtcgagtgctcataatttggtttcttctcccc 16870825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 102 - 198
Target Start/End: Original strand, 42265397 - 42265492
Alignment:
Q  102 ttggttgtttggtgagtcgagttctcacactttggttgtttggtgagtctagttctcaca-tttggttgttaggtgagtcgagtgctcacaatttggt 198  Q
    ||||||||||||||| || ||| |||||  ||||||||||||||||||| ||| |||||| |||||||||| ||||| || |||||||||||||||||    
T  42265397 ttggttgtttggtga-tcaagtgctcactgtttggttgtttggtgagtcgagt-ctcacaatttggttgtttggtgattcaagtgctcacaatttggt 42265492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 16870659 - 16870701
Alignment:
Q  106 ttgtttggtgagtcgagttctcacactttggttgtttggtgag 148  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  16870659 ttgtttggtgagtcgatttctcacactttggttgtttggtgag 16870701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 60 - 149
Target Start/End: Original strand, 54147671 - 54147761
Alignment:
Q  60 agtgctcacaattgatttgtttggtgaatcgagtgcttacaattg-gttgtttggtgagtcgagttctcacactttggttgtttggtgagt 149  Q
    |||||||| ||||  |||||||||||| ||  ||||| ||| ||  ||||||||||||||| |||||||||| ||||||||||||||||||    
T  54147671 agtgctcataatttgtttgtttggtgagtcaggtgctcacactttagttgtttggtgagtctagttctcacattttggttgtttggtgagt 54147761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 163 - 209
Target Start/End: Original strand, 54147869 - 54147915
Alignment:
Q  163 ttggttgttaggtgagtcgagtgctcacaatttggttttttctcccc 209  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||    
T  54147869 ttggttgtttggtgagtcgagtgctcacaatttggtttcttctcccc 54147915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 209
Target Start/End: Original strand, 16870628 - 16870731
Alignment:
Q  106 ttgtttggtgagtcgagttctcacactttggttgtttggtgagtctagttctcaca-tttggttgttaggtgagtcgagtgctcacaatttggttttttc 204  Q
    |||||||||| ||| ||  |||| | |||| |||||||||||||| | |||||||| |||||||||| |||||| |  |||||||||||||||||| |||    
T  16870628 ttgtttggtgggtcaagaactcataatttgcttgtttggtgagtcgatttctcacactttggttgtttggtgag-catgtgctcacaatttggtttcttc 16870726  T
Q  205 tcccc 209  Q
    |||||    
T  16870727 tcccc 16870731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 199
Target Start/End: Original strand, 54147651 - 54147750
Alignment:
Q  101 attggttgtttggtgagtcgagttctcacactttggttgtttggtgagtctagttctcaca-tttggttgttaggtgagtcgagtgctcacaatttggtt 199  Q
    |||| |||||||||| ||| ||| |||| | |||| ||||||||||||||  || |||||| ||| |||||| |||||||| ||| |||||| |||||||    
T  54147651 attgtttgtttggtgggtcaagtgctcataatttgtttgtttggtgagtcaggtgctcacactttagttgtttggtgagtctagttctcacattttggtt 54147750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 112
Target Start/End: Original strand, 24225514 - 24225551
Alignment:
Q  76 ttgtttggtgaatcgagtgcttacaa-ttggttgtttg 112  Q
    |||||||||||||||||||||||||| |||||||||||    
T  24225514 ttgtttggtgaatcgagtgcttacaatttggttgtttg 24225551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 199
Target Start/End: Original strand, 42265396 - 42265462
Alignment:
Q  132 tttggttgtttggtgagtctagttctcac-atttggttgttaggtgagtcgagtgctcacaatttggtt 199  Q
    |||||||||||||||| || ||| |||||  |||||||||| |||||||||||| ||||||||||||||    
T  42265396 tttggttgtttggtga-tcaagtgctcactgtttggttgtttggtgagtcgagt-ctcacaatttggtt 42265462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 54147869 - 54147905
Alignment:
Q  102 ttggttgtttggtgagtcgagttctcacactttggtt 138  Q
    |||||||||||||||||||||| |||||| |||||||    
T  54147869 ttggttgtttggtgagtcgagtgctcacaatttggtt 54147905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 132 - 211
Target Start/End: Original strand, 20242148 - 20242227
Alignment:
Q  132 tttggttgtttggtgagtctagttctcacatttggttgttaggtgagtcgagtgctcacaatttggttttttctccccct 211  Q
    ||||||||||||||||||  |||||||||||||||||||  ||||||| | |||||||||||||||||| ||||||||||    
T  20242148 tttggttgtttggtgagtagagttctcacatttggttgtctggtgagtagtgtgctcacaatttggtttcttctccccct 20242227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 209
Target Start/End: Original strand, 20241964 - 20242041
Alignment:
Q  132 tttggttgtttggtgagtctagttctcaca-tttggttgttaggtgagtcgagtgctcacaatttggttttttctcccc 209  Q
    |||| |||||||||||||| |||||||||| |||||||||| |||||| || |||||||||||||||||| ||||||||    
T  20241964 tttgcttgtttggtgagtcgagttctcacattttggttgtttggtgag-cgtgtgctcacaatttggtttcttctcccc 20242041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 209
Target Start/End: Original strand, 20242056 - 20242133
Alignment:
Q  132 tttggttgtttggtgagtctagttctcaca-tttggttgttaggtgagtcgagtgctcacaatttggttttttctcccc 209  Q
    |||||| |||||||||||| |||||||||| |||||||||| |||||| || |||||||||||||||||| ||||||||    
T  20242056 tttggtggtttggtgagtcgagttctcacactttggttgtttggtgag-cgtgtgctcacaatttggtttcttctcccc 20242133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 102 - 148
Target Start/End: Original strand, 20242057 - 20242103
Alignment:
Q  102 ttggttgtttggtgagtcgagttctcacactttggttgtttggtgag 148  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||    
T  20242057 ttggtggtttggtgagtcgagttctcacactttggttgtttggtgag 20242103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 209
Target Start/End: Complemental strand, 20251011 - 20250934
Alignment:
Q  132 tttggttgtttggtgagtctagttctcaca-tttggttgttaggtgagtcgagtgctcacaatttggttttttctcccc 209  Q
    |||||| |||||||||||| |||||||||| |||||||||| |||||| || |||||||||||||||||| ||||||||    
T  20251011 tttggtggtttggtgagtcgagttctcacactttggttgtttggtgag-cgtgtgctcacaatttggtttcttctcccc 20250934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 102 - 148
Target Start/End: Complemental strand, 20251010 - 20250964
Alignment:
Q  102 ttggttgtttggtgagtcgagttctcacactttggttgtttggtgag 148  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||    
T  20251010 ttggtggtttggtgagtcgagttctcacactttggttgtttggtgag 20250964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 209
Target Start/End: Complemental strand, 20251103 - 20251026
Alignment:
Q  132 tttggttgtttggtgagtctagttctcaca-tttggttgttaggtgagtcgagtgctcacaatttggttttttctcccc 209  Q
    |||| |||||||||||||| |||||||||| |||||||||| |||||| || |||||||||||||||||| ||||||||    
T  20251103 tttgcttgtttggtgagtcgagttctcacattttggttgtttggtgag-cgtgtgctcacaatttggtttcttctcccc 20251026  T

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Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 20241969 - 20242011
Alignment:
Q  106 ttgtttggtgagtcgagttctcacactttggttgtttggtgag 148  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  20241969 ttgtttggtgagtcgagttctcacattttggttgtttggtgag 20242011  T

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Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 148
Target Start/End: Complemental strand, 20251098 - 20251056
Alignment:
Q  106 ttgtttggtgagtcgagttctcacactttggttgtttggtgag 148  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  20251098 ttgtttggtgagtcgagttctcacattttggttgtttggtgag 20251056  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 20242149 - 20242195
Alignment:
Q  102 ttggttgtttggtgagtcgagttctcacactttggttgtttggtgagt 149  Q
    ||||||||||||||||| ||||||||||| ||||||||| ||||||||    
T  20242149 ttggttgtttggtgagtagagttctcaca-tttggttgtctggtgagt 20242195  T

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Target: scaffold0499 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 199
Target Start/End: Complemental strand, 7335 - 7238
Alignment:
Q  100 aattggttgtttggtgagtcgagttctcacactttggttgtttggtgagtctagttctcacatttggttgttaggtgagtcgagtgctcacaatttggtt 199  Q
    |||||||||||||||||||||||| ||||||  ||| ||||||| |||| | | | |||||| ||  | ||| ||||||||  |||||||||||||||||    
T  7335 aattggttgtttggtgagtcgagtgctcacaaattgattgtttgttgagacaaatgctcacaatt--tagtttggtgagtcaggtgctcacaatttggtt 7238  T

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