View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20925_low_15 (Length: 212)
Name: NF20925_low_15
Description: NF20925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20925_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 34174337 - 34174158
Alignment:
| Q |
14 |
aagaatatgtaaagtgaattaagacataattataatgctaaaagtaatagagaaaaataaagaactactcattttatttctcaaatccaaatggattgtt |
113 |
Q |
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| T |
34174337 |
aagaatatgtaaagtgaattaagacataattataatgctaaaagtaatagagaaaaataaagaactactcgttttatttctcaaatccaaattgattgtt |
34174238 |
T |
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| Q |
114 |
attattttattatcatcaaaggaaggactacaaatttctaaggcctctaggacagcagaggggctctatatcgcaacatc |
193 |
Q |
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| T |
34174237 |
attattttattattatcaaaggaaggactacaaatttctaaggcctctgggacagcagaggggctctatattgcaacatc |
34174158 |
T |
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