View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20925_low_2 (Length: 433)
Name: NF20925_low_2
Description: NF20925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20925_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 118 - 421
Target Start/End: Complemental strand, 17879497 - 17879194
Alignment:
| Q |
118 |
agcatggacattttactgtatgtcatctttgaatggtagtattagttagctaagattttggaaatactgctatacctcatttacataaataatgatatac |
217 |
Q |
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| T |
17879497 |
agcatggacattttactgtatgtcatctttgaatggtagtattagttagctaagattttggaaatactgctatacctcatttacataaatactgatatac |
17879398 |
T |
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| Q |
218 |
ttgttttaagctgaagtttgattcggttcaacagataatcttttgatacgttaactgtgattgctctgtgaagctttattagttagacaactttcattct |
317 |
Q |
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| T |
17879397 |
ttatttcaagctgaagtttgattcggttcaacagataatcttttgatacgttaactgtgattgctctgtgaagctttattagttagacaactttcactct |
17879298 |
T |
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| Q |
318 |
tattacacaaccttcactttcatgtccatttaaatataggtttgtgctctgatatacattcaattaatctgttagttgcatattgtagctagaaacctga |
417 |
Q |
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| T |
17879297 |
tattacacaaccttcactttcatgtccatttaaatataggtttgtgctctgatatacgttcaattaatctgttagttgcatattgtagctagaaacctga |
17879198 |
T |
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| Q |
418 |
tatt |
421 |
Q |
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|||| |
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| T |
17879197 |
tatt |
17879194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 163 - 260
Target Start/End: Complemental strand, 15046837 - 15046740
Alignment:
| Q |
163 |
ttagctaagattttggaaatactgctatacctcatttacataaataatgatatacttgttttaagctgaagtttgattcggttcaacagataatcttt |
260 |
Q |
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| T |
15046837 |
ttagctaaaattttggaaatattgctatatcttatttacataaatattgctatacctgtttcaagcagaagtttgatttggttctatagataatcttt |
15046740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 209
Target Start/End: Complemental strand, 5326516 - 5326476
Alignment:
| Q |
169 |
aagattttggaaatactgctatacctcatttacataaataa |
209 |
Q |
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| T |
5326516 |
aagattttggaaatattgctatacctcatttacaaaaataa |
5326476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 15046966 - 15046916
Alignment:
| Q |
25 |
gctttaatcttcagattaacatttgattaagcagattgacagctagtttaa |
75 |
Q |
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| T |
15046966 |
gctttgatcttcagattgacatttaattaagcagattgaaaggtagtttaa |
15046916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 324
Target Start/End: Complemental strand, 5325976 - 5325911
Alignment:
| Q |
259 |
tttgatacgttaactgtgattgctctgtgaagctttattagttagacaactttcattcttattaca |
324 |
Q |
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| T |
5325976 |
tttgatatgttgactgtgattgcactaatgagctttattaattagacaactttcactcttattaca |
5325911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 352 - 421
Target Start/End: Original strand, 36877896 - 36877968
Alignment:
| Q |
352 |
tataggtttgtgctctgatatacattcaatt--aatctgttagttgcata-ttgtagctagaaacctgatatt |
421 |
Q |
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| T |
36877896 |
tataggtttgtgttctgatatatgttcaattaaaatctgttagttgcagacctgtagctagaaacctgatatt |
36877968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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