View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20925_low_7 (Length: 357)
Name: NF20925_low_7
Description: NF20925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20925_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 17 - 331
Target Start/End: Complemental strand, 46072767 - 46072453
Alignment:
| Q |
17 |
gaaaataccaaggactgtacgaaaggcatcatcatcgaatggtggcgtgccattttgggacaggaacgctgcaggtaagtctgatgaatctgtcagtaag |
116 |
Q |
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| T |
46072767 |
gaaaataccaaggactgtacgaaaggcaccatcattgaatggtggcgtgccattttgggacaggaacgctgctggtaagtctgatgaatctgtcagtaag |
46072668 |
T |
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| Q |
117 |
gagcctgaagtgtgtgaagatagaagaaggccacggcagaaaagaacacaggaggaaaaagagaacaacagacgctgattaatatccgtttgttaccctt |
216 |
Q |
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| T |
46072667 |
gagcctgaagtgtgtgaagatagaagaaggccacggcagaaaagaacacaggaggaaaaagagaacaacagacgctgattaatatccgtttgttaccctt |
46072568 |
T |
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| Q |
217 |
ttcggctacatttgtatatataccaaaaaagccacaaggagttagtgtaatgtttagaaaattgatcttcctttgcctgcagcagataaacaaggacata |
316 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
46072567 |
ttcggctacatttgtatatataccaaaaaggccacaaggagttagtgtaatgtttagaaaattgatcttcctttgcctgcagcagataaacagggacata |
46072468 |
T |
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| Q |
317 |
gatgaattgcattga |
331 |
Q |
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||||||||||||||| |
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| T |
46072467 |
gatgaattgcattga |
46072453 |
T |
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