View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20925_low_9 (Length: 290)
Name: NF20925_low_9
Description: NF20925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20925_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 7 - 271
Target Start/End: Complemental strand, 24729538 - 24729278
Alignment:
| Q |
7 |
aatcaaaatcagtgaagttaaagaacgagaatgaaaactgaaattcaaacagaattccatccacaaacctggccaaggatcacaaccttaacagaatgaa |
106 |
Q |
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| T |
24729538 |
aatcaaaatcagtgaagtaaaagaaagagaatgaaaactgaaattcaaacagacttcca----caaacctggcaaaggatcacaacctagacagaatgaa |
24729443 |
T |
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| Q |
107 |
aaagagaagtgttaaaagcatcgaaaatcaaatgcggaggaggatatatagaatctttgaaagnnnnnnnctcatttctgacaaacatgcaaagagcagg |
206 |
Q |
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|| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24729442 |
aaggagaagtgttaaaagcatcgaaaatcaaatgtggaggaggatatacagaatctttgaaagaaaaaaactcatttctgacaaacatgcaaagagcagg |
24729343 |
T |
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| Q |
207 |
gaagtaagatttctgaaattcatcatcaggcaaagttgccaaccaagattgttccacaagcatat |
271 |
Q |
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| T |
24729342 |
gaagtaagatttctgaaattcatcatcaggcaaagcttccaaccaagattattccacaagcatat |
24729278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 7 - 271
Target Start/End: Complemental strand, 28281338 - 28281081
Alignment:
| Q |
7 |
aatcaaaatcagtgaagttaaagaacgagaatgaaaactgaaattcaaacagaattccatccacaaacctggccaaggatcacaaccttaacagaatgaa |
106 |
Q |
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| T |
28281338 |
aatcaaaatcagtgaacaaaaagatagagaatgaaaactgaaattcaaacagaa----atccacaaacctggccaaggatcacagccttaacagaatgaa |
28281243 |
T |
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| Q |
107 |
aaagagaagtgttaaaagcatcgaaaatcaaatgcggaggaggatatatagaatctttgaaagnnnnnnnctcatttctgacaaacatgcaaagagcagg |
206 |
Q |
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| T |
28281242 |
aaggagtagtgttaaaagcatcgaaaatcaaatgcggaggaggatatacagaatctttgaaagcaaaatactcatttccaacgaacatgcaaagagccag |
28281143 |
T |
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| Q |
207 |
gaagtaagatttctgaaattcatcatcaggcaaagttgccaaccaagattgttccacaagcatat |
271 |
Q |
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| T |
28281142 |
ggcgtacgatttctgaaat---tcatcaggtaaagcttccaaccaagattgttccacaagcatat |
28281081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 65 - 271
Target Start/End: Complemental strand, 28289395 - 28289192
Alignment:
| Q |
65 |
atccacaaacctggccaaggatcacaaccttaacagaatgaaaaagagaagtgttaaaagcatcgaaaatcaaatgcggaggaggatatatagaatcttt |
164 |
Q |
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||||||||||||||||||| |||||| ||||||| ||||||||| ||| ||| |||| ||||| |||||||||||||| ||||||||||| |||||||| |
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| T |
28289395 |
atccacaaacctggccaagaatcacagccttaacggaatgaaaaggagtagtattaagagcattgaaaatcaaatgcgaaggaggatatacggaatcttt |
28289296 |
T |
|
| Q |
165 |
gaaagnnnnnnnctcatttctgacaaacatgcaaagagcagggaagtaagatttctgaaattcatcatcaggcaaagttgccaaccaagattgttccaca |
264 |
Q |
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||||| ||||||| ||| |||||||||||||| ||| ||||| ||||||||||||| || || || | | ||||||||||||| || ||| |
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| T |
28289295 |
gaaagcgaaaatctcattttggacgaacatgcaaagagccggggcgtaaggtttctgaaattcacca---ggtaatgcttccaaccaagattgctctaca |
28289199 |
T |
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| Q |
265 |
agcatat |
271 |
Q |
| |
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||||||| |
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| T |
28289198 |
agcatat |
28289192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 151
Target Start/End: Complemental strand, 28278498 - 28278412
Alignment:
| Q |
65 |
atccacaaacctggccaaggatcacaaccttaacagaatgaaaaagagaagtgttaaaagcatcgaaaatcaaatgcggaggaggat |
151 |
Q |
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||||||||||||||||||| |||||||||||||||| ||||||| ||| ||| |||| ||||| ||||||||||||| ||||||||| |
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| T |
28278498 |
atccacaaacctggccaagaatcacaaccttaacaggatgaaaaggagtagtattaagagcattgaaaatcaaatgctgaggaggat |
28278412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 65 - 154
Target Start/End: Complemental strand, 28300172 - 28300083
Alignment:
| Q |
65 |
atccacaaacctggccaaggatcacaaccttaacagaatgaaaaagagaagtgttaaaagcatcgaaaatcaaatgcggaggaggatata |
154 |
Q |
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|||||||||||||||||||||||||||||||| |||| |||||| | | ||| |||| ||||| |||||||||||||| ||||||||||| |
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| T |
28300172 |
atccacaaacctggccaaggatcacaaccttagcagattgaaaaggggtagtattaagagcattgaaaatcaaatgcgcaggaggatata |
28300083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 26 - 228
Target Start/End: Original strand, 28746885 - 28747083
Alignment:
| Q |
26 |
aaagaacgagaatgaaaactgaaattcaaacagaattccatccacaaacctggccaaggatcacaaccttaacagaatgaaaaagagaagtgttaaaagc |
125 |
Q |
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|||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| |
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| T |
28746885 |
aaagaaagagagtgaaaactgaaattcaaacagaa----atccacaaacctggccaaggatcacagccttaacagaatgaaaagcagtggtgttaaaagc |
28746980 |
T |
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| Q |
126 |
atcgaaaatcaaatgcggaggaggatatatagaatctttgaaagnnnnnnnctcatttctgacaaacatgcaaagagcagggaagtaagatttctgaaat |
225 |
Q |
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|||||||||||||| |||||||||||||| ||||||||||| || |||||||| || |||||||||||||||||| ||||| |||||||||| |
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| T |
28746981 |
atcgaaaatcaaatacggaggaggatatacagaatctttgagagcaaaatactcatttccgatgaacatgcaaagagcaggggcgtaaggtttctgaaat |
28747080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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