View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20926_high_22 (Length: 357)
Name: NF20926_high_22
Description: NF20926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20926_high_22 |
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Alignment Details
Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 25 - 349
Target Start/End: Original strand, 9832612 - 9832936
Alignment:
| Q |
25 |
tttatgtgcattgatcagccactacattgtccctgaattgggaccagatgtgaaattcacttatgcttctcacaaggcagtgaatgaatacaaggaagcc |
124 |
Q |
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| T |
9832612 |
tttatgtgcattgatcagccactacattgtccccgaattgggacctgatgtgaaattcacttatgcttctcacaaagcagtgaatgaatacaaggaagcc |
9832711 |
T |
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| Q |
125 |
aaggcggtaagcatttaaagtcatttgcgtacatttcatttttcaggacaagttctgatgttggtttttgtgtgggatgttttcatgtgtttatctatct |
224 |
Q |
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| T |
9832712 |
aaggcggtaagcatttaaagtcatttgcgtacatttcatttttcaggaaaagttctgatgttggtttttgtgtgggatgttttcatgtgtttatctatct |
9832811 |
T |
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| Q |
225 |
ctacattgtccctgaatattaaatttttctttcagcttggagtcgatactattccagtcctcgttggcccagtatcatacttgttgctctccaagcttgc |
324 |
Q |
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| T |
9832812 |
ctacattgtccctgaatattaaatttttctttcagcttggagtcgatactattccagtcctcgttggcccagtatcatacttgttgctctccaagcttgc |
9832911 |
T |
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| Q |
325 |
taacggtgttgatccatcctttgat |
349 |
Q |
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| T |
9832912 |
taacggtgttgatccatcctttgat |
9832936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 135
Target Start/End: Original strand, 35945558 - 35945653
Alignment:
| Q |
40 |
cagccactacattgtccctgaattgggaccagatgtgaaattcacttatgcttctcacaaggcagtgaatgaatacaaggaagccaaggcggtaag |
135 |
Q |
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| T |
35945558 |
cagccatttcattgttcctgaattgggtccagatgttaaattctcctatgcatcacacaaggcagtggatgaatacaacgaggccaaagctgtaag |
35945653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 318
Target Start/End: Complemental strand, 33469500 - 33469429
Alignment:
| Q |
247 |
atttttctttcagcttggagtcgatactattccagtcctcgttggcccagtatcatacttgttgctctccaa |
318 |
Q |
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|||| |||| ||||||||||| || ||| |||| || || |||||||| || |||||||||||||||||||| |
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| T |
33469500 |
atttgtcttacagcttggagtagacactgttcccgttcttgttggccctgtttcatacttgttgctctccaa |
33469429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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