View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20926_high_29 (Length: 267)
Name: NF20926_high_29
Description: NF20926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20926_high_29 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 34 - 267
Target Start/End: Complemental strand, 15545525 - 15545292
Alignment:
| Q |
34 |
ttaatatggataattctcatttgtgaggcagtgactaattcatgataatgggtgacgtcttctgtacatatgttgcacacgtacgtacatatcatcattc |
133 |
Q |
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| T |
15545525 |
ttaatatggataattctcatttgtgaggcagtgactaattcatgataatgggtgacgtcttctgtacatatgttgcacacgtacgtacatatcatcattc |
15545426 |
T |
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| Q |
134 |
tttcctaatggaatgttttcatagaatattcaattggttcaaaacaaaaattccattgcgtttattgacttggtccattctagttttaatttgcatgtat |
233 |
Q |
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| T |
15545425 |
tttcctaatggaatgttttcatagaatattcaattggttcaaaacaaaaattccattgcgtattttgacttggtccattctagttttaatttgcatgtat |
15545326 |
T |
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| Q |
234 |
tttggaaacatgtgtaaattgtagaagatgaact |
267 |
Q |
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| T |
15545325 |
tttggaaacatgtgtaaattgtagaagatgaact |
15545292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 15521537 - 15521441
Alignment:
| Q |
116 |
acgtacatatcatcattctttcctaatggaatgttttcatagaatattcaattggttcaaaacaaaaattccattgcgtttattgacttggtccattcta |
215 |
Q |
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| T |
15521537 |
acgtacatattgtcattgtcgcctaatagaat-ttttcatagaatattcggttggttcaatacaaaaaatccatt--gtgtattgacttggtcctttcta |
15521441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 15527932 - 15527884
Alignment:
| Q |
214 |
tagttttaatttgcatgtattttggaaacatgtgtaaattgtagaagat |
262 |
Q |
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| T |
15527932 |
tagttctaatttgcatgtattttggaaatatgtctaaattatagaagat |
15527884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 111
Target Start/End: Complemental strand, 15528023 - 15527990
Alignment:
| Q |
78 |
ataatgggtgacgtcttctgtacatatgttgcac |
111 |
Q |
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| T |
15528023 |
ataatgggtgacgtcttctatacatatgttgcac |
15527990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 15515584 - 15515540
Alignment:
| Q |
218 |
tttaatttgcatgtattttggaaacatgtgtaaattgtagaagat |
262 |
Q |
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| T |
15515584 |
tttaatatgcatgtattttggagatatgtgtaaattatagaagat |
15515540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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