View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20926_high_39 (Length: 240)
Name: NF20926_high_39
Description: NF20926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20926_high_39 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 10947431 - 10947210
Alignment:
| Q |
1 |
tgcgtgaatctttctactagtgtcatttaaaatgaagttattcttattccccttgcgtgcaccattctactgttgtcacttgaaatgaagttactcctat |
100 |
Q |
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| T |
10947431 |
tgcgtgaatctttctactagtgtcatttaaaatgaagttattcttattccccttgcgtgcaccattctactgttgtcacttgaaatgaagttactcctat |
10947332 |
T |
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| Q |
101 |
tattaatcnnnnnnnactttccctttcctatatatcataatagattatacaataatgaaaatttaattaaagaaataaaaagacttttaagactagtaac |
200 |
Q |
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| T |
10947331 |
tattaatctttttttactttccctttcctatatatcataatagattatacaataatgaaaatttaattaaagaaataaaaggacttttaagactagtaac |
10947232 |
T |
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| Q |
201 |
ttttgtgtgtgacgtcgtctct |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
10947231 |
ttttgtgtgtgacgtcgtctct |
10947210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 10938858 - 10938638
Alignment:
| Q |
1 |
tgcgtgaatctttctactagtgtcatttaaaatgaagtt------attcttattccccttgcgtgcaccattctactgttgtcacttgaaatgaagttac |
94 |
Q |
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| T |
10938858 |
tgcgtgagtctttctactagtgtcacttgaaatgaagtttaatttattttcattccccttgtgtgaaactttctactagtgtcacttgaaatgaagttat |
10938759 |
T |
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| Q |
95 |
tcctattattaatcnnnnnnnactttccctttcctatatatcataatagattatacaataatgaaaatttaattaaagaaataaaaagacttttaagact |
194 |
Q |
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| T |
10938758 |
tcctattattaatctttttttattttccctatactgt----cataataggttataaaataat-aaaattttatcaaagaaataaaaagacttttatgaag |
10938664 |
T |
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| Q |
195 |
agtaacttttgtgtgtgacgtcgtct |
220 |
Q |
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| T |
10938663 |
agtaacttttgtgtgtgacctcgtct |
10938638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 10927616 - 10927538
Alignment:
| Q |
30 |
aaatgaagttattcttattccccttgcgtgcaccattctactgttgtcacttgaaatgaagttactcctattattaatc |
108 |
Q |
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|||| |||||||| ||||| |||||| ||||||| |||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
10927616 |
aaattaagttatttttatttcccttgtgtgcacctttctactggtgtcacttgaaatgaagttattcctattattaatc |
10927538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 10926786 - 10926706
Alignment:
| Q |
133 |
tatcataatagattatacaataatgaaaatttaattaaagaaataaaaagacttttaagactagtaacttttgtgtgtgac |
213 |
Q |
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| T |
10926786 |
tatcatattaggttataaagtaatgaaaattttatcaaagaaataaaaagacttttatgatgagtaacttttgtgtgtgac |
10926706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 10916734 - 10916679
Alignment:
| Q |
53 |
ttgcgtgcaccattctactgttgtcacttgaaatgaagttactcctattattaatc |
108 |
Q |
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| T |
10916734 |
ttgcgtgcacctttctactagtgtcacttgaaatgtagttattcctattagtaatc |
10916679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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