View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20926_high_4 (Length: 629)
Name: NF20926_high_4
Description: NF20926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20926_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 438; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 23 - 503
Target Start/End: Complemental strand, 18542850 - 18542369
Alignment:
| Q |
23 |
gtcatatctctctttctttagagctcttaaagtttgtttagttttttgaattgttagtgtgtttgtttcgatagcactaaagttactttaaaataaaatt |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
18542850 |
gtcatatctctctttctttagagctcttaaagtttgtttagttttttgaattgttagtgtgtttgtttcgatagtgctaaagttactttaaaataaaatt |
18542751 |
T |
|
| Q |
123 |
gttatatttgaatgcgtgtaaaaaatgatttggcaaaataaacttgagtgtaaaaattatgcttgggtcttgaaagtcactttttgctttctaaaaattt |
222 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18542750 |
gttatatttgaatgcatgtaaaaaatgatttggcaaaataaacttgagagtaaaaattatgcttgggtcttgaaagtcactttttgctttctaaaaattt |
18542651 |
T |
|
| Q |
223 |
aatggtatttcttatccatttagatttgataatataagtgctacaatccaaggacaatggtaaaagaaactaatttaaataatgatgttcatcatattat |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
18542650 |
aatggtatttcttatccatttagatttgataatataagtggtacaatccaaggacaatggtaaaagaaactaatttagataatgatgttcatcatattat |
18542551 |
T |
|
| Q |
323 |
agattagacaaggaataaaagagagtttatggttttattttacatacttaatggaaaggaatagacacattcattcatctggatttcatgaaggcccttg |
422 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18542550 |
agactagacaaggaataaaagagagtttatggttttattttacatacttaatagaaaggaatagacacattcattcatctggatttcatgaaggcccttg |
18542451 |
T |
|
| Q |
423 |
attccgttcacttttgctacttatgtcaccactgtaaccttcccaatttttcaaatat-cccaacctattttattatttgat |
503 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
18542450 |
atttcgttcacttttgctacttatgtcaccactgtaaccttcccaatttttcaaatatccccaacctattttattatttgat |
18542369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 356 - 500
Target Start/End: Complemental strand, 18555575 - 18555430
Alignment:
| Q |
356 |
tttattttacatacttaatggaaaggaatagacacattcattcatctggatttcatgaaggcccttgattccgttcacttttgctacttatgtcaccact |
455 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
18555575 |
tttattttacatacttaatggaaaggaatagacacgttcattcatctggatttcatgaaggcccttgattcccttcacttttgctacttatgtcaccact |
18555476 |
T |
|
| Q |
456 |
gtaaccttcccaatttttcaaatat-cccaacctattttattattt |
500 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
18555475 |
gtaaccttcccaatttttcaaatatccccaacctattttattattt |
18555430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 234 - 364
Target Start/End: Complemental strand, 18555995 - 18555865
Alignment:
| Q |
234 |
ttatccatttagatttgataatataagtgctacaatccaaggacaatggtaaaagaaactaatttaaataatgatgttcatcatattatagattagacaa |
333 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||| ||||||| |
|
|
| T |
18555995 |
ttatccatttagctttgataatataagtggtacaatccaaggacaatggtgaaagaaactaatttagataaagatgttcatcatattatagactagacaa |
18555896 |
T |
|
| Q |
334 |
ggaataaaagagagtttatggttttatttta |
364 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |
|
|
| T |
18555895 |
ggaataaaaaagagtttatggttttatttta |
18555865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 344 - 500
Target Start/End: Complemental strand, 18550609 - 18550452
Alignment:
| Q |
344 |
agagtttatggttttattttacatacttaatggaaaggaatagacacattcattcatctggatttcatgaaggcccttgattccgttcacttttgctact |
443 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||| || |||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||| |
|
|
| T |
18550609 |
agagtttatggttttattttacatgctttatgggaatgaatagacacattcattcatctggatttcatggaggctcttgattcccttcacttttgctact |
18550510 |
T |
|
| Q |
444 |
tatgtcaccactgtaaccttcccaatttttcaaatat-cccaacctattttattattt |
500 |
Q |
| |
|
|||||||| | |||||||| || |||||||||||||| ||||||| || ||||||||| |
|
|
| T |
18550509 |
tatgtcacaattgtaacctccctaatttttcaaatatccccaaccaatattattattt |
18550452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 534 - 616
Target Start/End: Complemental strand, 18542350 - 18542268
Alignment:
| Q |
534 |
catcaagttcactttctttatcgtttccaccttcgatttgtccacctccaccttgtgcacctccttcactgccatttcctcct |
616 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
18542350 |
catcaagttcactttctttatcgtttccaccttcgatttgttcacctccaccttgtgcacctccttcactaccatttcctcct |
18542268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 104 - 221
Target Start/End: Complemental strand, 18551243 - 18551122
Alignment:
| Q |
104 |
gttactttaaaataaaattg-ttatatttgaatgcgtgta---aaaaatgatttggcaaaataaacttgagtgtaaaaattatgcttgggtcttgaaagt |
199 |
Q |
| |
|
||||||||||| |||||||| |||| ||||||||||| || |||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
18551243 |
gttactttaaactaaaattgattatgtttgaatgcgtttatgtaaaagtgatttgtcaaaataaacttgagcgtaaaaattatgcttgggtcttgaaagt |
18551144 |
T |
|
| Q |
200 |
cactttttgctttctaaaaatt |
221 |
Q |
| |
|
| ||||| ||||| ||||||| |
|
|
| T |
18551143 |
ctcttttagctttgcaaaaatt |
18551122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 533 - 602
Target Start/End: Complemental strand, 18550430 - 18550361
Alignment:
| Q |
533 |
gcatcaagttcactttctttatcgtttccaccttcgatttgtccacctccaccttgtgcacctccttcac |
602 |
Q |
| |
|
||||||||| ||||| |||| || |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
18550430 |
gcatcaagtccacttcctttgtcttttccaccttcgatttgtccacctccaccttgcgcacctccttcac |
18550361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 533 - 616
Target Start/End: Complemental strand, 18555408 - 18555325
Alignment:
| Q |
533 |
gcatcaagttcactttctttatcgtttccaccttcgatttgtccacctccaccttgtgcacctccttcactgccatttcctcct |
616 |
Q |
| |
|
||||||||| |||||||||| || |||||||| ||||| || |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
18555408 |
gcatcaagtccactttctttgtcacttccacctctgatttttctacctccaccttgtgcacctccttcaccgccatttcctcct |
18555325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 18551529 - 18551478
Alignment:
| Q |
23 |
gtcatatctctctttctttagagctcttaaagtttgtttagttttttgaatt |
74 |
Q |
| |
|
|||| ||||||||||||||||||||||| | |||||||||||| |||||||| |
|
|
| T |
18551529 |
gtcacatctctctttctttagagctcttgatgtttgtttagttgtttgaatt |
18551478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University