View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20926_high_43 (Length: 230)
Name: NF20926_high_43
Description: NF20926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20926_high_43 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 26 - 218
Target Start/End: Original strand, 16992869 - 16993061
Alignment:
| Q |
26 |
cacttcctccactttcaccaccaccctcagacatcttctcatcactatgttccaacccttcttcaccaacatcttcatattcatcatcatcgatggaaat |
125 |
Q |
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| T |
16992869 |
cacttcctccactttcaccaccaccctcagacatcttctcatcactatgttccaacccttcttcaccaacatcttcatattcatcatcatcgatggaaat |
16992968 |
T |
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| Q |
126 |
tacctcggcatctgcaggaacaacaaaaggttcttcagtcatctttcnnnnnnnagaaccagaaacatattccaaacccttatcttcttcatc |
218 |
Q |
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| T |
16992969 |
tacctcggcatctgcaggaacaacaaaaggttcttcagtcatctttctttttttagaaccagaaacatattccaaacccttatcttcttcatc |
16993061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 16969214 - 16969275
Alignment:
| Q |
101 |
catattcatcatcatcgatggaaattacctcggcatctgcaggaacaacaaaaggttcttca |
162 |
Q |
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| T |
16969214 |
cataatcatcatgttcaatggaaattaccttggcaccttcaggaaccacaaaaggttcttca |
16969275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 54 - 218
Target Start/End: Complemental strand, 35262418 - 35262254
Alignment:
| Q |
54 |
agacatcttctcatcactatgttccaacccttcttcaccaacatcttcatattcatcatcatcgatggaaattacctcggcatctgcaggaacaacaaaa |
153 |
Q |
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||||||||| ||||||||||| || | ||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
35262418 |
agacatcttgtcatcactatgctctgaaccttcttgaccaacatcttcatattcatcatcatcgatggaaactacctcagcatctgcaggaacaacaaaa |
35262319 |
T |
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| Q |
154 |
ggttcttcagtcatctttcnnnnnnnagaaccagaaacatattccaaacccttatcttcttcatc |
218 |
Q |
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|||||||| ||||||| | ||||| ||||||||| ||||| ||||||||||||||||| |
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| T |
35262318 |
ggttcttcgttcatcttcctttttttagaacgagaaacatagtccaaccccttatcttcttcatc |
35262254 |
T |
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