View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20926_high_5 (Length: 556)
Name: NF20926_high_5
Description: NF20926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20926_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 428; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 19 - 539
Target Start/End: Original strand, 20380989 - 20381514
Alignment:
| Q |
19 |
atggagaaacagacattcaaaggagaattgagaaacaaaattcaaagtataagactcatgagacagacattgcaagtgacattcattcaaagtatatgac |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20380989 |
atggagaaacagacattcaaaggagaattgagaaacaaaattcaaagtataagactcatgagacagacattgcaagtgacattcattcaaagtatatgac |
20381088 |
T |
|
| Q |
119 |
tcatgagagagactttgaagatgaggaaaatcttgacttca-gacgagtctcttccaatcaggggagaacgatgaagaataatatggacttttcaagaaa |
217 |
Q |
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|||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
20381089 |
tcatgagacagactttgaagatgaggaaaatcttgacttaaagacgagtctcttccaatcaggggagaacgattaagaataatacggacttttcaagaaa |
20381188 |
T |
|
| Q |
218 |
tataaaaactta----tgggactttcaaggaacaccactagatgaatacatgataatagttaacatggtctataatcctagatgaatactttcatgtaac |
313 |
Q |
| |
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|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||| |
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| T |
20381189 |
tataaaaacttaattatgggactttcaagtaacaccactagatgaatacatgataatagttaacatggtctatcaccctagatgaatactttcaagtaac |
20381288 |
T |
|
| Q |
314 |
cctgggtcaaatcttttagccattcaaattcttgctaaccccgtctaccatatatgcttcttgtagcaattttctttatgttcctggatgtactatggat |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
20381289 |
cctgggtcaaatcttttagccattcaaattcttgctaaccccgtctaccatatatgcttcttgtagcaattttcattatgttcctggatgtactagggat |
20381388 |
T |
|
| Q |
414 |
tttatttacattgatattagttaacatggttaaactnnnnnnntgtttatgttaatacatagaatttagatttttgaatttaacatatatatgttttata |
513 |
Q |
| |
|
||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20381389 |
tttatttacattgattgtacttaacatggttaaacttaaaaaatgtttatgttaatacatagaatttagatttttgaatttaacatatatatgttttata |
20381488 |
T |
|
| Q |
514 |
gatctattattcagatggattattat |
539 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
20381489 |
gatctattattcagatggattattat |
20381514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 379 - 506
Target Start/End: Complemental strand, 58674 - 58547
Alignment:
| Q |
379 |
gcaattttctttatgttcctggatgtactatggattttatttacattgatattagttaacatggttaaactnnnnnnntgtttatgttaatacatagaat |
478 |
Q |
| |
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||||||| | |||||||| |||||||||||||||||| ||||||| ||||| ||||||| |||||||| || |||||||| ||||||||| ||| |
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| T |
58674 |
gcaatttacattatgttcttggatgtactatggatttaatttacaatgatactagttaatatggttaaccttaaaaaatgtttatgataatacataaaat |
58575 |
T |
|
| Q |
479 |
ttagatttttgaatttaacatatatatg |
506 |
Q |
| |
|
|| ||| |||||||||||| | |||||| |
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|
| T |
58574 |
ttggatctttgaatttaacgtgtatatg |
58547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 163 - 218
Target Start/End: Original strand, 20400512 - 20400567
Alignment:
| Q |
163 |
gagtctcttccaatcaggggagaacgatgaagaataatatggacttttcaagaaat |
218 |
Q |
| |
|
||||||||||||||| | |||||||| |||||||||||||| | |||||||||||| |
|
|
| T |
20400512 |
gagtctcttccaatccgaggagaacgttgaagaataatatgaaattttcaagaaat |
20400567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 379 - 510
Target Start/End: Original strand, 534925 - 535056
Alignment:
| Q |
379 |
gcaattttctttatgttcctggatgtactatggattttatttacattgatattagttaacatggttaaactnnnnnnntgtttatgttaatacatagaat |
478 |
Q |
| |
|
||||||| | |||||||| |||||||||||||||||| ||||||| ||||| ||||||| |||||||| || |||||||| ||||||||| ||| |
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|
| T |
534925 |
gcaatttacattatgttcttggatgtactatggatttaatttacaatgatactagttaatatggttaaccttaaaaaatgtttatgataatacataaaat |
535024 |
T |
|
| Q |
479 |
ttagatttttgaatttaacatatatatgtttt |
510 |
Q |
| |
|
|| |||||||||||||||| | |||||||||| |
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|
| T |
535025 |
ttggatttttgaatttaacgtgtatatgtttt |
535056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 379 - 510
Target Start/End: Original strand, 22975647 - 22975778
Alignment:
| Q |
379 |
gcaattttctttatgttcctggatgtactatggattttatttacattgatattagttaacatggttaaactnnnnnnntgtttatgttaatacatagaat |
478 |
Q |
| |
|
||||||| | |||||||| |||||||||||||||||| ||||||| ||||| ||||||| |||||||| || |||||||| ||||||||| ||| |
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|
| T |
22975647 |
gcaatttacattatgttcttggatgtactatggatttaatttacaatgatactagttaatatggttaaccttaaaaaatgtttatgataatacataaaat |
22975746 |
T |
|
| Q |
479 |
ttagatttttgaatttaacatatatatgtttt |
510 |
Q |
| |
|
|| ||||||||| ||||| | |||||||||| |
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|
| T |
22975747 |
ttggatttttgagattaacgtgtatatgtttt |
22975778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 379 - 510
Target Start/End: Original strand, 42085598 - 42085729
Alignment:
| Q |
379 |
gcaattttctttatgttcctggatgtactatggattttatttacattgatattagttaacatggttaaactnnnnnnntgtttatgttaatacatagaat |
478 |
Q |
| |
|
||||||| | |||| ||| |||||||| |||| |||| ||||||| ||||| ||||||| |||||||| || |||||||| ||||||||| ||| |
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|
| T |
42085598 |
gcaatttacattattttcttggatgtattatgaatttaatttacaatgatactagttaatatggttaaccttaaaaaatgtttatgataatacataaaat |
42085697 |
T |
|
| Q |
479 |
ttagatttttgaatttaacatatatatgtttt |
510 |
Q |
| |
|
|| |||||||||||||||| | |||||||||| |
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|
| T |
42085698 |
ttggatttttgaatttaacgtgtatatgtttt |
42085729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 389 - 510
Target Start/End: Original strand, 9222071 - 9222189
Alignment:
| Q |
389 |
ttatgttcctggatgtactatggattttatttacattgatattagttaacatggttaaactnnnnnnntgtttatgttaatacatagaatttagattttt |
488 |
Q |
| |
|
|||||||| ||||||||||| |||||| ||||||| ||||| ||||||| |||||||| || |||||||| ||||||| ||||| ||||||| |
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|
| T |
9222071 |
ttatgttcttggatgtactacggatttaatttacaatgatactagttaatatggttaaccttaaaaaatgtttatg---atacataaaatttggattttt |
9222167 |
T |
|
| Q |
489 |
gaatttaacatatatatgtttt |
510 |
Q |
| |
|
||||||||| | ||| |||||| |
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|
| T |
9222168 |
gaatttaacgtgtatctgtttt |
9222189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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