View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20926_high_6 (Length: 553)

Name: NF20926_high_6
Description: NF20926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20926_high_6
NF20926_high_6
[»] chr7 (16 HSPs)
chr7 (11-534)||(24048377-24048900)
chr7 (216-288)||(1418502-1418574)
chr7 (220-260)||(19302482-19302522)
chr7 (220-257)||(30134246-30134283)
chr7 (220-257)||(34036031-34036068)
chr7 (221-264)||(7513666-7513709)
chr7 (231-290)||(14823799-14823858)
chr7 (231-290)||(15270806-15270865)
chr7 (220-259)||(30748953-30748992)
chr7 (220-344)||(41040190-41040316)
chr7 (233-278)||(8427106-8427151)
chr7 (219-259)||(11619076-11619116)
chr7 (455-491)||(24909534-24909570)
chr7 (220-288)||(30751602-30751670)
chr7 (213-289)||(31341217-31341293)
chr7 (220-260)||(33266405-33266445)
[»] chr3 (21 HSPs)
chr3 (231-288)||(2923561-2923618)
chr3 (220-312)||(21872214-21872308)
chr3 (220-286)||(30657371-30657437)
chr3 (232-329)||(24624250-24624349)
chr3 (243-287)||(26542621-26542665)
chr3 (219-291)||(45590731-45590803)
chr3 (231-290)||(31403440-31403499)
chr3 (219-290)||(50211816-50211887)
chr3 (220-278)||(11253594-11253652)
chr3 (227-289)||(25129960-25130022)
chr3 (232-277)||(22667497-22667542)
chr3 (232-277)||(22724136-22724181)
chr3 (232-289)||(24158447-24158504)
chr3 (219-260)||(24684740-24684781)
chr3 (233-290)||(26330255-26330312)
chr3 (220-257)||(26990144-26990181)
chr3 (231-260)||(34610736-34610765)
chr3 (232-260)||(5448555-5448583)
chr3 (220-260)||(16072960-16073000)
chr3 (220-260)||(25447164-25447204)
chr3 (220-260)||(26878311-26878351)
[»] chr4 (20 HSPs)
chr4 (227-287)||(21157852-21157912)
chr4 (303-442)||(54325041-54325181)
chr4 (234-290)||(8328052-8328108)
chr4 (220-260)||(17822784-17822824)
chr4 (234-290)||(18628486-18628542)
chr4 (220-260)||(27043749-27043789)
chr4 (231-312)||(27725271-27725354)
chr4 (224-315)||(50298570-50298662)
chr4 (220-255)||(1133044-1133079)
chr4 (232-287)||(28615608-28615663)
chr4 (222-264)||(20656146-20656188)
chr4 (231-288)||(1017111-1017168)
chr4 (220-277)||(2811565-2811622)
chr4 (231-264)||(33534099-33534132)
chr4 (219-259)||(4448981-4449021)
chr4 (236-264)||(8420902-8420930)
chr4 (294-342)||(29467619-29467667)
chr4 (220-260)||(39691068-39691108)
chr4 (216-260)||(41336871-41336915)
chr4 (220-260)||(42403942-42403982)
[»] chr8 (18 HSPs)
chr8 (220-286)||(11059648-11059714)
chr8 (231-290)||(2364390-2364449)
chr8 (222-404)||(12361156-12361343)
chr8 (220-260)||(38602438-38602478)
chr8 (236-287)||(25881350-25881401)
chr8 (219-253)||(7711969-7712003)
chr8 (362-432)||(10114426-10114496)
chr8 (235-289)||(24326113-24326167)
chr8 (222-291)||(1821909-1821978)
chr8 (222-291)||(1856354-1856423)
chr8 (218-258)||(2606162-2606202)
chr8 (221-289)||(4560584-4560652)
chr8 (220-264)||(7008705-7008749)
chr8 (222-290)||(11376784-11376852)
chr8 (232-260)||(30251385-30251413)
chr8 (222-266)||(30627872-30627916)
chr8 (232-264)||(32976480-32976512)
chr8 (453-493)||(37776838-37776878)
[»] chr1 (19 HSPs)
chr1 (219-368)||(6292494-6292644)
chr1 (222-290)||(7252541-7252609)
chr1 (232-276)||(28837284-28837328)
chr1 (220-287)||(12564418-12564485)
chr1 (222-289)||(17009503-17009570)
chr1 (379-418)||(29794003-29794042)
chr1 (220-290)||(4276569-4276639)
chr1 (220-282)||(4622182-4622244)
chr1 (220-290)||(27807196-27807266)
chr1 (218-260)||(41505785-41505827)
chr1 (232-285)||(15581340-15581393)
chr1 (220-289)||(26866395-26866464)
chr1 (231-260)||(33204324-33204353)
chr1 (220-260)||(2295207-2295247)
chr1 (218-290)||(3319863-3319935)
chr1 (218-282)||(21002244-21002308)
chr1 (222-258)||(29793619-29793655)
chr1 (222-258)||(30257797-30257833)
chr1 (218-258)||(49521717-49521757)
[»] chr2 (20 HSPs)
chr2 (237-289)||(34927045-34927097)
chr2 (219-289)||(5759493-5759563)
chr2 (220-277)||(3973636-3973693)
chr2 (220-289)||(22878180-22878249)
chr2 (219-290)||(4350771-4350842)
chr2 (219-278)||(21279967-21280026)
chr2 (235-289)||(13864717-13864771)
chr2 (231-285)||(14277823-14277877)
chr2 (220-258)||(18525160-18525198)
chr2 (232-290)||(26548534-26548592)
chr2 (218-260)||(30331862-30331904)
chr2 (232-289)||(25609878-25609935)
chr2 (233-315)||(29430812-29430896)
chr2 (220-277)||(40077430-40077487)
chr2 (221-286)||(43456627-43456692)
chr2 (233-265)||(13735994-13736026)
chr2 (220-260)||(18179060-18179100)
chr2 (220-260)||(27317490-27317530)
chr2 (218-258)||(40837354-40837394)
chr2 (222-290)||(42852623-42852691)
[»] chr5 (16 HSPs)
chr5 (232-316)||(42646944-42647029)
chr5 (220-289)||(11297115-11297184)
chr5 (218-255)||(28578961-28578998)
chr5 (231-290)||(17498792-17498851)
chr5 (219-285)||(34975450-34975515)
chr5 (218-260)||(39594918-39594960)
chr5 (219-264)||(9711185-9711230)
chr5 (231-288)||(14980592-14980649)
chr5 (222-275)||(33961779-33961832)
chr5 (231-264)||(37968984-37969017)
chr5 (220-252)||(6723861-6723893)
chr5 (220-264)||(10791101-10791145)
chr5 (238-286)||(13781812-13781860)
chr5 (220-260)||(15246944-15246984)
chr5 (218-258)||(36796624-36796664)
chr5 (454-490)||(39257542-39257578)
[»] chr6 (14 HSPs)
chr6 (220-277)||(30536884-30536941)
chr6 (216-264)||(35070382-35070430)
chr6 (219-258)||(13908353-13908392)
chr6 (217-264)||(32916943-32916989)
chr6 (223-289)||(2455892-2455958)
chr6 (220-290)||(29249474-29249544)
chr6 (232-290)||(31774458-31774516)
chr6 (239-288)||(32976061-32976110)
chr6 (364-407)||(4248919-4248963)
chr6 (220-264)||(7351590-7351634)
chr6 (220-260)||(21405073-21405113)
chr6 (235-291)||(27894113-27894169)
chr6 (220-260)||(34404645-34404685)
chr6 (232-260)||(35069543-35069571)
[»] scaffold0024 (1 HSPs)
scaffold0024 (236-332)||(27613-27711)


Alignment Details
Target: chr7 (Bit Score: 476; Significance: 0; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 11 - 534
Target Start/End: Complemental strand, 24048900 - 24048377
Alignment:
Q  11 catcatcacatttatcataaactagtaaatattttatcatggtttagtagaagatacgcagccacaatttttggtctgctgcgaccgttaaagtcgcatt 110  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||    
T  24048900 catcataacatttatcataaactactaaatattttatcatggtttagtagaagatatgcagccacaatttttggtcttctgcgactgttaaagtcgcatt 24048801  T
Q  111 tgactgcaattctttgcaactttaaggatcacagtacgaccttggcttatgacaaaagtgatcgtaatcgtgatttaaaaccgtggcttttagtaacatg 210  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24048800 tgactgcaattccttgcaactttaaggatcacagcacgaccttggcttatgacaaaagtgatcctaatcgtgatttaaaaccgtggcttttagtaacatg 24048701  T
Q  211 taaaagacttgtttgaatttacttatttgagcttatctactgacataagtacttaaaagactgtttggaagagcttatgattagcttatgtcatgtccat 310  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24048700 taaaagacttgtttgaatttacttatttgagtttatctactgacataagtacttaaaagactgtttggaagagcttatgattagcttatgtcatgtccat 24048601  T
Q  311 aagctcatttcagtttatttccctaaactctccaaaattacttacgaaactagcttattgtttatacaaaaacaattcgacttattttatcttttgtaac 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24048600 aagctcatttcagtttatttccctaaactctccaaaattacttacgaaactagcttattgtttatataaaaacaattcgacttattttatcttttgtaac 24048501  T
Q  411 aaaaatagatcatacataagcagttgtatgatgatttcctaaactataagcgcttaattaagtagtttatctaaacaaggtcaaagtcattcaacactta 510  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  24048500 aaaaatagatcatacataagcagttgtatgatgatttcctaaactataagcgcttaattaagtagtttatctaaacaaggtcaaagtcattcgacactta 24048401  T
Q  511 cttcggtgggttgaatgtcgagta 534  Q
    ||||||||||||||||||| ||||    
T  24048400 cttcggtgggttgaatgtcaagta 24048377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 288
Target Start/End: Complemental strand, 1418574 - 1418502
Alignment:
Q  216 gacttgtttgaatttacttatttgagcttatctactgacataagtacttaaaagactgtttggaagagcttat 288  Q
    |||||||||| ||| |||||||||||||||||||||| |||||| |||||  || |||||||  |||||||||    
T  1418574 gacttgtttggattgacttatttgagcttatctactggcataagcacttatgaggctgtttgtgagagcttat 1418502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 260
Target Start/End: Original strand, 19302482 - 19302522
Alignment:
Q  220 tgtttgaatttacttatttgagcttatctactgacataagt 260  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  19302482 tgtttgaattgacttatttgagcttatctactgacataagt 19302522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 220 - 257
Target Start/End: Complemental strand, 30134283 - 30134246
Alignment:
Q  220 tgtttgaatttacttatttgagcttatctactgacata 257  Q
    |||||||||| |||||||||||||||||||||||||||    
T  30134283 tgtttgaattaacttatttgagcttatctactgacata 30134246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 220 - 257
Target Start/End: Complemental strand, 34036068 - 34036031
Alignment:
Q  220 tgtttgaatttacttatttgagcttatctactgacata 257  Q
    |||||||||| |||||||||||||||||||||||||||    
T  34036068 tgtttgaattgacttatttgagcttatctactgacata 34036031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 264
Target Start/End: Complemental strand, 7513709 - 7513666
Alignment:
Q  221 gtttgaatttacttatttgagcttatctactgacataagtactt 264  Q
    ||||||||| |||||||||||||||||||||| |||||| ||||    
T  7513709 gtttgaattgacttatttgagcttatctactggcataagcactt 7513666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 14823799 - 14823858
Alignment:
Q  231 acttatttgagcttatctactgacataagtacttaaaagactgtttggaagagcttatga 290  Q
    ||||||||||||||||||| |||| |||||||||   ||| ||||| |||||||||||||    
T  14823799 acttatttgagcttatctaatgacttaagtacttttgagattgttttgaagagcttatga 14823858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 15270806 - 15270865
Alignment:
Q  231 acttatttgagcttatctactgacataagtacttaaaagactgtttggaagagcttatga 290  Q
    ||||||||||||||||||| |||| |||||||||   ||| ||||| |||||||||||||    
T  15270806 acttatttgagcttatctaatgacttaagtacttttgagattgttttgaagagcttatga 15270865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 259
Target Start/End: Original strand, 30748953 - 30748992
Alignment:
Q  220 tgtttgaatttacttatttgagcttatctactgacataag 259  Q
    |||||||||| | |||||||||||||||||||||||||||    
T  30748953 tgtttgaattgagttatttgagcttatctactgacataag 30748992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 344
Target Start/End: Complemental strand, 41040316 - 41040190
Alignment:
Q  220 tgtttgaatttacttatttgagcttatctactgacataagtacttaaaagactgtttggaagagcttatg--attagcttatgtcatgtccataagctca 317  Q
    |||||||||| | ||||||||| ||||||||||| ||||||| ||   || || ||| ||||||||||||  |  |||||||| ||| ||||| ||||      
T  41040316 tgtttgaattgatttatttgagtttatctactgatataagtatttgtgaggctctttagaagagcttatggaaacagcttatgacatatccatgagctgt 41040217  T
Q  318 tttcagtttatttccctaaactctcca 344  Q
    | | ||||||||||| |||||||||||    
T  41040216 tatgagtttatttccataaactctcca 41040190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 278
Target Start/End: Complemental strand, 8427151 - 8427106
Alignment:
Q  233 ttatttgagcttatctactgacataagtacttaaaagactgtttgg 278  Q
    ||||||||||||||||||| ||||||||||||   |||||||||||    
T  8427151 ttatttgagcttatctactaacataagtacttgtgagactgtttgg 8427106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 11619076 - 11619116
Alignment:
Q  219 ttgtttgaatttacttatttgagcttatctactgacataag 259  Q
    ||||||| |||  ||||||||||||||||||||||||||||    
T  11619076 ttgtttggattggcttatttgagcttatctactgacataag 11619116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 455 - 491
Target Start/End: Complemental strand, 24909570 - 24909534
Alignment:
Q  455 tataagcgcttaattaagtagtttatctaaacaaggt 491  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  24909570 tataagcgcttaattaagttgtttatcaaaacaaggt 24909534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 30751670 - 30751602
Alignment:
Q  220 tgtttgaatttacttatttgagcttatctactgacataagtacttaaaagactgtttggaagagcttat 288  Q
    |||||| ||| |||||||| | |||||||||||||||||| ||||    |||||||||| |||||||||    
T  30751670 tgtttggattaacttatttaaacttatctactgacataagcacttgtgcgactgtttgggagagcttat 30751602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 213 - 289
Target Start/End: Complemental strand, 31341293 - 31341217
Alignment:
Q  213 aaagacttgtttgaatttacttatttgagcttatctactgacataagtacttaaaagactgtttggaagagcttatg 289  Q
    |||||| |||||| ||| |||||||||||||| ||||||  |||||  ||||  |||||||||||| |||| |||||    
T  31341293 aaagacatgtttggattgacttatttgagcttttctacttgcataaacacttttaagactgtttgggagagtttatg 31341217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 220 - 260
Target Start/End: Original strand, 33266405 - 33266445
Alignment:
Q  220 tgtttgaatttacttatttgagcttatctactgacataagt 260  Q
    |||||| ||| |||||||||||||||||||| |||||||||    
T  33266405 tgtttggattgacttatttgagcttatctaccgacataagt 33266445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 231 - 288
Target Start/End: Complemental strand, 2923618 - 2923561
Alignment:
Q  231 acttatttgagcttatctactgacataagtacttaaaagactgtttggaagagcttat 288  Q
    ||||||| ||||||||||| |||||||||||||| ||||||||||||||||| |||||    
T  2923618 acttattcgagcttatctattgacataagtacttgaaagactgtttggaagaacttat 2923561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 312
Target Start/End: Original strand, 21872214 - 21872308
Alignment:
Q  220 tgtttgaatttacttatttgagcttatctactgacataagtacttaaaagactgtttggaagagcttatg--attagcttatgtcatgtccataa 312  Q
    |||||| ||| |||||||||| |||||||||||||||||| ||||   ||||||||||||| ||||| ||  | ||||||||| |||||||||||    
T  21872214 tgtttggattaacttatttgatcttatctactgacataagcacttgtgagactgtttggaaaagcttttgaaaatagcttatgacatgtccataa 21872308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 286
Target Start/End: Complemental strand, 30657437 - 30657371
Alignment:
Q  220 tgtttgaatttacttatttgagcttatctactgacataagtacttaaaagactgtttggaagagctt 286  Q
    |||||||||| | ||||||||| ||||||||||||||||| ||||   ||| |||||||||||||||    
T  30657437 tgtttgaattgatttatttgagtttatctactgacataagcacttttgagattgtttggaagagctt 30657371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 329
Target Start/End: Complemental strand, 24624349 - 24624250
Alignment:
Q  232 cttatttgagcttatctactgacataagtacttaaaagactgtttggaagagcttatg--attagcttatgtcatgtccataagctcatttcagtttatt 329  Q
    |||| |||| |||||||||| |||| || ||||  |||||||||||||||||||||||  |  |||||||| ||||||||||| ||  |||||| |||||    
T  24624349 cttagttgaacttatctactcacattagcacttgtaagactgtttggaagagcttatgaaaacagcttatgacatgtccataaactgttttcagcttatt 24624250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 26542665 - 26542621
Alignment:
Q  243 ttatctactgacataagtacttaaaagactgtttggaagagctta 287  Q
    ||||||||| ||||||||||||  |||||||||||||||||||||    
T  26542665 ttatctactcacataagtacttgtaagactgtttggaagagctta 26542621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 291
Target Start/End: Complemental strand, 45590803 - 45590731
Alignment:
Q  219 ttgtttgaatttacttatttgagcttatctactgacataagtacttaaaagactgtttggaagagcttatgat 291  Q
    ||||||||||| |||| ||||| ||||||||||  |||||| ||||   ||||||||||| ||||||||||||    
T  45590803 ttgtttgaattgacttttttgaacttatctactagcataagcacttgtgagactgtttgggagagcttatgat 45590731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 290
Target Start/End: Complemental strand, 31403499 - 31403440
Alignment:
Q  231 acttatttgagcttatctactgacataagtacttaaaagactgtttggaagagcttatga 290  Q
    ||||| ||||||||||||||| ||||||||||||  |||||| ||||| ||| |||||||    
T  31403499 acttacttgagcttatctactaacataagtacttgcaagactatttgggagaacttatga 31403440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 290
Target Start/End: Complemental strand, 50211887 - 50211816
Alignment:
Q  219 ttgtttgaatttacttatttgagcttatctactgacataagtacttaaaagactgtttggaagagcttatga 290  Q
    ||||||| ||| |||||||| |||||||||||| ||||||| ||||  |||||||||||  ||| |||||||    
T  50211887 ttgtttggattaacttattttagcttatctactaacataagcacttgtaagactgtttgagagaacttatga 50211816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 278
Target Start/End: Complemental strand, 11253652 - 11253594
Alignment:
Q  220 tgtttgaatttacttatttgagcttatctactgacataagtacttaaaagactgtttgg 278  Q
    |||||||||| ||||||||||| |||||||||  |||||| |||| | |||||||||||    
T  11253652 tgtttgaattgacttatttgagattatctactagcataagcacttgagagactgtttgg 11253594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 289
Target Start/End: Complemental strand, 25130022 - 25129960
Alignment:
Q  227 atttacttatttgagcttatctactgacataagtacttaaaagactgtttggaagagcttatg 289  Q
    ||||| ||||| || |||||||||||||||| ||||||   ||||||||| ||||||||||||    
T  25130022 atttatttattcgaacttatctactgacatatgtacttgtgagactgtttagaagagcttatg 25129960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 22667542 - 22667497
Alignment:
Q  232 cttatttgagcttatctactgacataagtacttaaaagactgtttg 277  Q
    |||||||||||||||||||||||||||| ||||   ||||||||||    
T  22667542 cttatttgagcttatctactgacataagcacttgtgagactgtttg 22667497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 22724181 - 22724136
Alignment:
Q  232 cttatttgagcttatctactgacataagtacttaaaagactgtttg 277  Q
    |||||||||||||||||||||||||||| ||||   ||||||||||    
T  22724181 cttatttgagcttatctactgacataagcacttgtgagactgtttg 22724136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 289
Target Start/End: Original strand, 24158447 - 24158504
Alignment:
Q  232 cttatttgagcttatctactgacataagtacttaaaagactgtttggaagagcttatg 289  Q
    ||||||| |||||||||||||||||||||||||   | ||||||||  ||||||||||    
T  24158447 cttatttaagcttatctactgacataagtacttgtgaaactgtttgcgagagcttatg 24158504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 260
Target Start/End: Original strand, 24684740 - 24684781
Alignment:
Q  219 ttgtttgaatttacttatttgagcttatctactgacataagt 260  Q
    ||||||| ||| |||||||||||||||||||||| |||||||    
T  24684740 ttgtttggattaacttatttgagcttatctactggcataagt 24684781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 290
Target Start/End: Original strand, 26330255 - 26330312
Alignment:
Q  233 ttatttgagcttatctactgacataagtacttaaaagactgtttggaagagcttatga 290  Q
    ||||||||| ||||||||||| ||||||| ||   ||||||||| |||||||||||||    
T  26330255 ttatttgaggttatctactgaaataagtatttgtgagactgtttagaagagcttatga 26330312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 257
Target Start/End: Original strand, 26990144 - 26990181
Alignment:
Q  220 tgtttgaatttacttatttgagcttatctactgacata 257  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  26990144 tgtttggattgacttatttgagcttatctactgacata 26990181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 260
Target Start/End: Original strand, 34610736 - 34610765
Alignment:
Q  231 acttatttgagcttatctactgacataagt 260  Q
    ||||||||||||||||||||||||||||||    
T  34610736 acttatttgagcttatctactgacataagt 34610765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 232 - 260
Target Start/End: Complemental strand, 5448583 - 5448555
Alignment:
Q  232 cttatttgagcttatctactgacataagt 260  Q
    |||||||||||||||||||||||||||||    
T  5448583 cttatttgagcttatctactgacataagt 5448555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 220 - 260
Target Start/End: Original strand, 16072960 - 16073000
Alignment:
Q  220 tgtttgaatttacttatttgagcttatctactgacataagt 260  Q
    |||||| ||| ||||||||||||||||||| ||||||||||    
T  16072960 tgtttggattgacttatttgagcttatctaatgacataagt 16073000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 220 - 260
Target Start/End: Original strand, 25447164 - 25447204
Alignment:
Q  220 tgtttgaatttacttatttgagcttatctactgacataagt 260  Q
    |||||| ||| ||||||||||| ||||||||||||||||||    
T  25447164 tgtttggattgacttatttgagtttatctactgacataagt 25447204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 220 - 260
Target Start/End: Complemental strand, 26878351 - 26878311
Alignment:
Q  220 tgtttgaatttacttatttgagcttatctactgacataagt 260  Q
    ||||||||||  |||||| ||||||||||||||||||||||    
T  26878351 tgtttgaattggcttattcgagcttatctactgacataagt 26878311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 227 - 287
Target Start/End: Complemental strand, 21157912 - 21157852
Alignment:
Q  227 atttacttatttgagcttatctactgacataagtacttaaaagactgtttggaagagctta 287  Q
    |||| |||||||||||| ||||||||||||||| ||||  |||||||||||||||||||||    
T  21157912 atttgcttatttgagctcatctactgacataagcacttgtaagactgtttggaagagctta 21157852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 442
Target Start/End: Original strand, 54325041 - 54325181
Alignment:
Q  303 atgtccataagctcatttcagtttatttccctaaactctccaaaattacttacgaaactagcttattgtttatacaaaaacaattcgac-ttattttatc 401  Q
    |||||||||||||  ||||||||||| ||| |||||||||||  ||  |||  |||| |||||||| | |||||  |||||| || ||| ||||||||||    
T  54325041 atgtccataagctgttttcagtttatctccataaactctccatgatagcttttgaaaatagcttatagcttatatgaaaacagtttgactttattttatc 54325140  T
Q  402 ttttgtaacaaaaatagatcatacataagcagttgtatgat 442  Q
    |||||||| | |||||| | ||||| ||||| || ||||||    
T  54325141 ttttgtaatagaaatagtttatacacaagcacttatatgat 54325181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 290
Target Start/End: Original strand, 8328052 - 8328108
Alignment:
Q  234 tatttgagcttatctactgacataagtacttaaaagactgtttggaagagcttatga 290  Q
    |||||||||||||||| || |||||| |||||  ||||||||||||| |||||||||    
T  8328052 tatttgagcttatctattggcataagcacttatgagactgtttggaatagcttatga 8328108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 260
Target Start/End: Original strand, 17822784 - 17822824
Alignment:
Q  220 tgtttgaatttacttatttgagcttatctactgacataagt 260  Q
    |||||| ||| ||||||||||||||||||||||||||||||    
T  17822784 tgtttggattaacttatttgagcttatctactgacataagt 17822824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 290
Target Start/End: Original strand, 18628486 - 18628542
Alignment:
Q  234 tatttgagcttatctactgacataagtacttaaaagactgtttggaagagcttatga 290  Q
    |||||||||||||||||||||||||  ||||   ||||||||||| |||||||||||    
T  18628486 tatttgagcttatctactgacataaacacttgtgagactgtttgggagagcttatga 18628542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 260
Target Start/End: Original strand, 27043749 - 27043789
Alignment:
Q  220 tgtttgaatttacttatttgagcttatctactgacataagt 260  Q
    |||||| ||| ||||||||||||||||||||||||||||||    
T  27043749 tgtttggattgacttatttgagcttatctactgacataagt 27043789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 312
Target Start/End: Complemental strand, 27725354 - 27725271
Alignment:
Q  231 acttatttgagcttatctactgacataagtacttaaaagactgtttggaagagcttatg--attagcttatgtcatgtccataa 312  Q
    ||||||||||||||||||||||| ||||| || || | |||||||||  ||||||||||  | || |||||| |||||||||||    
T  27725354 acttatttgagcttatctactgagataagcacatatacgactgtttgagagagcttatggaaataacttatgacatgtccataa 27725271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 315
Target Start/End: Complemental strand, 50298662 - 50298570
Alignment:
Q  224 tgaatttacttatttgagcttatctactgacataagtacttaaaagactgtttggaagagcttat-gattagcttatgtcatgtccataagct 315  Q
    |||||| | |||||| |||||||||||||||||||| ||||   ||||||||||||| | |||||  | ||||||||| ||||| ||||||||    
T  50298662 tgaattgatttattttagcttatctactgacataagcacttgtgagactgtttggaaaaacttataaaatagcttatgacatgttcataagct 50298570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 255
Target Start/End: Complemental strand, 1133079 - 1133044
Alignment:
Q  220 tgtttgaatttacttatttgagcttatctactgaca 255  Q
    |||||||||| |||||||||||||||||||||||||    
T  1133079 tgtttgaattgacttatttgagcttatctactgaca 1133044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 287
Target Start/End: Complemental strand, 28615663 - 28615608
Alignment:
Q  232 cttatttgagcttatctactgacataagtacttaaaagactgtttggaagagctta 287  Q
    |||||||||||||||||| ||||||||| | ||  |||||||||| ||||||||||    
T  28615663 cttatttgagcttatctaatgacataagcatttgtaagactgtttcgaagagctta 28615608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 222 - 264
Target Start/End: Complemental strand, 20656188 - 20656146
Alignment:
Q  222 tttgaatttacttatttgagcttatctactgacataagtactt 264  Q
    |||||||| | |||||||||||||||||||| |||||||||||    
T  20656188 tttgaattgatttatttgagcttatctactgtcataagtactt 20656146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 288
Target Start/End: Complemental strand, 1017168 - 1017111
Alignment:
Q  231 acttatttgagcttatctactgacataagtacttaaaagactgtttggaagagcttat 288  Q
    ||||||||||||| ||||||||||||||  ||||   ||||||||||||||| |||||    
T  1017168 acttatttgagctaatctactgacataaacacttgtgagactgtttggaagaacttat 1017111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 277
Target Start/End: Complemental strand, 2811622 - 2811565
Alignment:
Q  220 tgtttgaatttacttatttgagcttatctactgacataagtacttaaaagactgtttg 277  Q
    |||||||||| ||||||||||| |||||||||| |||||| | |||  ||||||||||    
T  2811622 tgtttgaattgacttatttgaggttatctactggcataagcatttatgagactgtttg 2811565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 264
Target Start/End: Original strand, 33534099 - 33534132
Alignment:
Q  231 acttatttgagcttatctactgacataagtactt 264  Q
    ||||||||||||||||||| ||||||||||||||    
T  33534099 acttatttgagcttatctagtgacataagtactt 33534132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 4448981 - 4449021
Alignment:
Q  219 ttgtttgaatttacttatttgagcttatctactgacataag 259  Q
    |||||||||||| ||||||||||||||||| || |||||||    
T  4448981 ttgtttgaatttccttatttgagcttatcttctaacataag 4449021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 264
Target Start/End: Complemental strand, 8420930 - 8420902
Alignment:
Q  236 tttgagcttatctactgacataagtactt 264  Q
    |||||||||||||||||||||||||||||    
T  8420930 tttgagcttatctactgacataagtactt 8420902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 294 - 342
Target Start/End: Original strand, 29467619 - 29467667
Alignment:
Q  294 gcttatgtcatgtccataagctcatttcagtttatttccctaaactctc 342  Q
    ||||||| ||||||||||||||  |||||| |||||||| |||||||||    
T  29467619 gcttatgacatgtccataagctgttttcagcttatttccataaactctc 29467667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 220 - 260
Target Start/End: Original strand, 39691068 - 39691108
Alignment:
Q  220 tgtttgaatttacttatttgagcttatctactgacataagt 260  Q
    |||||||||| |||||||||||||||||||||  |||||||    
T  39691068 tgtttgaattgacttatttgagcttatctactagcataagt 39691108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 41336915 - 41336871
Alignment:
Q  216 gacttgtttgaatttacttatttgagcttatctactgacataagt 260  Q
    |||||||||| ||| ||||||||||| ||||||||| ||||||||    
T  41336915 gacttgtttggattgacttatttgagtttatctactcacataagt 41336871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 220 - 260
Target Start/End: Original strand, 42403942 - 42403982
Alignment:
Q  220 tgtttgaatttacttatttgagcttatctactgacataagt 260  Q
    |||||| ||| ||||||||||||||||| ||||||||||||    
T  42403942 tgtttggattgacttatttgagcttatcaactgacataagt 42403982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 220 - 286
Target Start/End: Original strand, 11059648 - 11059714
Alignment:
Q  220 tgtttgaatttacttatttgagcttatctactgacataagtacttaaaagactgtttggaagagctt 286  Q
    |||||||||| |||||| |||||||||||| ||||||||| ||||| |||||||| ||| |||||||    
T  11059648 tgtttgaattgacttatgtgagcttatctaatgacataagcacttataagactgtctgggagagctt 11059714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 2364390 - 2364449
Alignment:
Q  231 acttatttgagcttatctactgacataagtacttaaaagactgtttggaagagcttatga 290  Q
    |||||||||| ||||||| |||||||||||||||   |||||||||||||||| ||||||    
T  2364390 acttatttgaacttatcttctgacataagtacttgtgagactgtttggaagagattatga 2364449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 222 - 404
Target Start/End: Complemental strand, 12361343 - 12361156
Alignment:
Q  222 tttgaatttacttatttgagcttatctactgacataagtacttaaaagactgtttggaagag--cttatg--attagcttatgtcatgtccataagctca 317  Q
    |||| ||| |||||||||| |||||||||||| ||||||||||   ||||| ||||  ||||  |||||   | ||||||||| ||||||||||||||      
T  12361343 tttggattgacttatttgaacttatctactgatataagtacttgttagactctttgagagagatcttatagaaatagcttatgacatgtccataagctgt 12361244  T
Q  318 tttcagtttatttccctaaactctccaaaattacttacgaaactagcttattgtttatacaaaaacaattcgactt-attttatcttt 404  Q
    |||||  |||||||| | | ||||||  ||| ||||| ||||  ||||||| | |||||  ||||||||| ||||| |||||||||||    
T  12361243 tttcaacttatttccattagctctcctgaataacttatgaaaacagcttatagcttatatgaaaacaatttgacttcattttatcttt 12361156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 260
Target Start/End: Complemental strand, 38602478 - 38602438
Alignment:
Q  220 tgtttgaatttacttatttgagcttatctactgacataagt 260  Q
    |||||| ||| ||||||||||||||||||||||||||||||    
T  38602478 tgtttggattgacttatttgagcttatctactgacataagt 38602438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 287
Target Start/End: Original strand, 25881350 - 25881401
Alignment:
Q  236 tttgagcttatctactgacataagtacttaaaagactgtttggaagagctta 287  Q
    |||||| ||||||||||||||||||||||   |||||||||| |||||||||    
T  25881350 tttgagtttatctactgacataagtacttgtgagactgtttgaaagagctta 25881401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 253
Target Start/End: Original strand, 7711969 - 7712003
Alignment:
Q  219 ttgtttgaatttacttatttgagcttatctactga 253  Q
    ||||||||||| |||||||||||||||||||||||    
T  7711969 ttgtttgaattgacttatttgagcttatctactga 7712003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 362 - 432
Target Start/End: Complemental strand, 10114496 - 10114426
Alignment:
Q  362 agcttattgtttatacaaaaacaattcgacttattttatcttttgtaacaaaaatagatcatacataagca 432  Q
    ||||||| | |||||| |||||||||| |||||||||||||||||  | | |||||| | |||||||||||    
T  10114496 agcttatagcttataccaaaacaattcaacttattttatcttttgctatagaaatagcttatacataagca 10114426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 289
Target Start/End: Complemental strand, 24326167 - 24326113
Alignment:
Q  235 atttgagcttatctactgacataagtacttaaaagactgtttggaagagcttatg 289  Q
    |||||||||||||||||| |||||| ||||   ||||||||||| ||||||||||    
T  24326167 atttgagcttatctactggcataagcacttgtgagactgtttgggagagcttatg 24326113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 291
Target Start/End: Complemental strand, 1821978 - 1821909
Alignment:
Q  222 tttgaatttacttatttgagcttatctactgacataagtacttaaaagactgtttggaagagcttatgat 291  Q
    |||||||| |||||||||||||||  ||| |||||||  ||||  |||||| ||||||||| ||||||||    
T  1821978 tttgaattgacttatttgagcttagataccgacataaacacttgtaagactatttggaagaacttatgat 1821909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 291
Target Start/End: Complemental strand, 1856423 - 1856354
Alignment:
Q  222 tttgaatttacttatttgagcttatctactgacataagtacttaaaagactgtttggaagagcttatgat 291  Q
    |||||||| |||||||||||||||  ||| |||||||  ||||  |||||| ||||||||| ||||||||    
T  1856423 tttgaattgacttatttgagcttagataccgacataaacacttgtaagactatttggaagaacttatgat 1856354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 2606202 - 2606162
Alignment:
Q  218 cttgtttgaatttacttatttgagcttatctactgacataa 258  Q
    |||||||| ||| ||||||| ||||||||||||||||||||    
T  2606202 cttgtttggattgacttattcgagcttatctactgacataa 2606162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 221 - 289
Target Start/End: Complemental strand, 4560652 - 4560584
Alignment:
Q  221 gtttgaatttacttatttgagcttatctactgacataagtacttaaaagactgtttggaagagcttatg 289  Q
    ||||| ||| ||||||||||||||||||| ||||||||| ||||   ||  ||||||||||| ||||||    
T  4560652 gtttggattgacttatttgagcttatctattgacataagcacttgtgaggttgtttggaagaacttatg 4560584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 7008749 - 7008705
Alignment:
Q  220 tgtttgaatttacttatttgagcttatctactgacataagtactt 264  Q
    |||||||||| ||||||||||| |||||||||| |||||| ||||    
T  7008749 tgtttgaattgacttatttgagtttatctactggcataagcactt 7008705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 222 - 290
Target Start/End: Complemental strand, 11376852 - 11376784
Alignment:
Q  222 tttgaatttacttatttgagcttatctactgacataagtacttaaaagactgtttggaagagcttatga 290  Q
    ||||||||  |||||||||||||||||||||| |||||| |||   ||||| ||||| ||| |||||||    
T  11376852 tttgaattggcttatttgagcttatctactgatataagttcttgtgagactatttgggagaacttatga 11376784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 232 - 260
Target Start/End: Original strand, 30251385 - 30251413
Alignment:
Q  232 cttatttgagcttatctactgacataagt 260  Q
    |||||||||||||||||||||||||||||    
T  30251385 cttatttgagcttatctactgacataagt 30251413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 30627872 - 30627916
Alignment:
Q  222 tttgaatttacttatttgagcttatctactgacataagtacttaa 266  Q
    |||| ||| |||||||| | |||||||||||||||||||||||||    
T  30627872 tttgtattgacttatttcaacttatctactgacataagtacttaa 30627916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 232 - 264
Target Start/End: Complemental strand, 32976512 - 32976480
Alignment:
Q  232 cttatttgagcttatctactgacataagtactt 264  Q
    |||||||||||||||||||||||||||| ||||    
T  32976512 cttatttgagcttatctactgacataagcactt 32976480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 453 - 493
Target Start/End: Original strand, 37776838 - 37776878
Alignment:
Q  453 actataagcgcttaattaagtagtttatctaaacaaggtca 493  Q
    ||||||||| ||||||||||| |||||||||||||| ||||    
T  37776838 actataagctcttaattaagttgtttatctaaacaatgtca 37776878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 219 - 368
Target Start/End: Complemental strand, 6292644 - 6292494
Alignment:
Q  219 ttgtttgaatttacttatttgagcttatctactgacataagtacttaaaagactgtttggaagagcttat-gattagcttatgtcatgtccataagctca 317  Q
    ||||||| ||| ||||||||||||||||||||||||||||| ||||   ||| ||||||| |||  || |  |  |||||||| ||||| ||||||||      
T  6292644 ttgtttggattgacttatttgagcttatctactgacataagcacttttgagattgtttgggagaatttttaaaacagcttatgacatgttcataagctgt 6292545  T
Q  318 tttcagtttatttccctaaactctccaaaattacttacgaaactagcttat 368  Q
    |||||| |||||| | ||| |||||||||||   |||||||| ||||||||    
T  6292544 tttcagcttattttcataagctctccaaaatagtttacgaaaatagcttat 6292494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 290
Target Start/End: Original strand, 7252541 - 7252609
Alignment:
Q  222 tttgaatttacttatttgagcttatctactgacataagtacttaaaagactgtttggaagagcttatga 290  Q
    ||||||||  |||||||||||| ||||||| |||||||||||| | | ||||||||| ||| |||||||    
T  7252541 tttgaattagcttatttgagctaatctactaacataagtacttgagaaactgtttgggagaacttatga 7252609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 276
Target Start/End: Original strand, 28837284 - 28837328
Alignment:
Q  232 cttatttgagcttatctactgacataagtacttaaaagactgttt 276  Q
    |||||||||||||||||||||||||||| |||| | |||||||||    
T  28837284 cttatttgagcttatctactgacataagcacttgagagactgttt 28837328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 287
Target Start/End: Original strand, 12564418 - 12564485
Alignment:
Q  220 tgtttgaatttacttatttgagcttatctactgacataagtacttaaaagactgtttggaagagctta 287  Q
    |||||||||| |||||||||||||||| |||||| ||||| ||||    |||||||||| ||||||||    
T  12564418 tgtttgaattgacttatttgagcttatatactgatataagcacttgtgtgactgtttgggagagctta 12564485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 289
Target Start/End: Original strand, 17009503 - 17009570
Alignment:
Q  222 tttgaatttacttatttgagcttatctactgacataagtacttaaaagactgtttggaagagcttatg 289  Q
    |||||||| ||||||||||| |||||||||||||||| | |||    |||||||||| ||||||||||    
T  17009503 tttgaattgacttatttgagtttatctactgacataattccttgttggactgtttgggagagcttatg 17009570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 418
Target Start/End: Original strand, 29794003 - 29794042
Alignment:
Q  379 aaaacaattcgacttattttatcttttgtaacaaaaatag 418  Q
    ||||||||| ||||||||||||||||||| ||||||||||    
T  29794003 aaaacaatttgacttattttatcttttgttacaaaaatag 29794042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 290
Target Start/End: Original strand, 4276569 - 4276639
Alignment:
Q  220 tgtttgaatttacttatttgagcttatctactgacataagtacttaaaagactgtttggaagagcttatga 290  Q
    |||||| |||||||||||||||||||||| ||| |||||| | ||   ||||| ||||||| |||||||||    
T  4276569 tgtttggatttacttatttgagcttatcttctggcataagcatttgttagactatttggaaaagcttatga 4276639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 282
Target Start/End: Complemental strand, 4622244 - 4622182
Alignment:
Q  220 tgtttgaatttacttatttgagcttatctactgacataagtacttaaaagactgtttggaaga 282  Q
    |||||||||| |||||||| |||||| ||| ||||||||| ||||   |||||||||||||||    
T  4622244 tgtttgaattgacttatttaagcttaactaatgacataagaacttgttagactgtttggaaga 4622182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 290
Target Start/End: Complemental strand, 27807266 - 27807196
Alignment:
Q  220 tgtttgaatttacttatttgagcttatctactgacataagtacttaaaagactgtttggaagagcttatga 290  Q
    ||||| |||| |||||||||| ||| |||||||||||||| | ||  |||||||||||  |||||||||||    
T  27807266 tgtttaaattgacttatttgaacttttctactgacataagcatttgtaagactgtttgagagagcttatga 27807196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 41505827 - 41505785
Alignment:
Q  218 cttgtttgaatttacttatttgagcttatctactgacataagt 260  Q
    |||||||| |||  |||||||||||||||||||||||||||||    
T  41505827 cttgtttggattggcttatttgagcttatctactgacataagt 41505785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 285
Target Start/End: Complemental strand, 15581393 - 15581340
Alignment:
Q  232 cttatttgagcttatctactgacataagtacttaaaagactgtttggaagagct 285  Q
    ||||||| |||||||||||||||||||| ||||   ||| ||||||||||||||    
T  15581393 cttattttagcttatctactgacataagcacttgtgagattgtttggaagagct 15581340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 289
Target Start/End: Complemental strand, 26866464 - 26866395
Alignment:
Q  220 tgtttgaatttacttatttgagcttatctactgacataagtacttaaaagactgtttggaagagcttatg 289  Q
    |||||| ||| |||||||| |||||||||||| ||| || |||||   ||||| ||||||||||||||||    
T  26866464 tgtttggattgacttatttcagcttatctactaacacaaatacttctgagactatttggaagagcttatg 26866395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 260
Target Start/End: Original strand, 33204324 - 33204353
Alignment:
Q  231 acttatttgagcttatctactgacataagt 260  Q
    ||||||||||||||||||||||||||||||    
T  33204324 acttatttgagcttatctactgacataagt 33204353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 220 - 260
Target Start/End: Complemental strand, 2295247 - 2295207
Alignment:
Q  220 tgtttgaatttacttatttgagcttatctactgacataagt 260  Q
    ||||||||||  ||||||||||||||||||||| |||||||    
T  2295247 tgtttgaattggcttatttgagcttatctactggcataagt 2295207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 218 - 290
Target Start/End: Original strand, 3319863 - 3319935
Alignment:
Q  218 cttgtttgaatttacttatttgagcttatctactgacataagtacttaaaagactgtttggaagagcttatga 290  Q
    |||||||| ||| |||||||||||||||||||||  || ||| | |||  |||||| ||| ||||||||||||    
T  3319863 cttgtttggattgacttatttgagcttatctactagcaaaagcaattatgagactgattgaaagagcttatga 3319935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 218 - 282
Target Start/End: Complemental strand, 21002308 - 21002244
Alignment:
Q  218 cttgtttgaatttacttatttgagcttatctactgacataagtacttaaaagactgtttggaaga 282  Q
    |||||||| |||  ||||||||||||||||||||  |||||| ||||   |||||||||||||||    
T  21002308 cttgtttggattggcttatttgagcttatctacttgcataagaacttgtgagactgtttggaaga 21002244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 29793619 - 29793655
Alignment:
Q  222 tttgaatttacttatttgagcttatctactgacataa 258  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  29793619 tttgtattgacttatttgagcttatctactgacataa 29793655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 222 - 258
Target Start/End: Complemental strand, 30257833 - 30257797
Alignment:
Q  222 tttgaatttacttatttgagcttatctactgacataa 258  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  30257833 tttggatttacttatttgagtttatctactgacataa 30257797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 49521717 - 49521757
Alignment:
Q  218 cttgtttgaatttacttatttgagcttatctactgacataa 258  Q
    |||| ||||||||| ||||||||| ||||||||||||||||    
T  49521717 cttgcttgaatttatttatttgagattatctactgacataa 49521757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 289
Target Start/End: Complemental strand, 34927097 - 34927045
Alignment:
Q  237 ttgagcttatctactgacataagtacttaaaagactgtttggaagagcttatg 289  Q
    |||||||||| |||||||||||| ||||| |||||||||||||||| ||||||    
T  34927097 ttgagcttatttactgacataagcacttataagactgtttggaagaacttatg 34927045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 289
Target Start/End: Original strand, 5759493 - 5759563
Alignment:
Q  219 ttgtttgaatttacttatttgagcttatctactgacataagtacttaaaagactgtttggaagagcttatg 289  Q
    |||||||| |||||||||||||| ||||||| ||  ||||||||||   ||||||||||| ||||||||||    
T  5759493 ttgtttgagtttacttatttgagtttatctattggtataagtacttgtgagactgtttgggagagcttatg 5759563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 220 - 277
Target Start/End: Complemental strand, 3973693 - 3973636
Alignment:
Q  220 tgtttgaatttacttatttgagcttatctactgacataagtacttaaaagactgtttg 277  Q
    |||||| ||| ||||||||||||||||| ||||| ||||| ||||| |||||||||||    
T  3973693 tgtttggattcacttatttgagcttatccactgatataagcacttataagactgtttg 3973636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 220 - 289
Target Start/End: Complemental strand, 22878249 - 22878180
Alignment:
Q  220 tgtttgaatttacttatttgagcttatctactgacataagtacttaaaagactgtttggaagagcttatg 289  Q
    |||||| ||| ||||||||||||||||| ||||||||||| ||||   ||||||||||| ||| ||||||    
T  22878249 tgtttggattgacttatttgagcttatccactgacataagcacttgtgagactgtttgggagaccttatg 22878180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 290
Target Start/End: Complemental strand, 4350842 - 4350771
Alignment:
Q  219 ttgtttgaatttacttatttgagcttatctactgacataagtacttaaaagactgtttggaagagcttatga 290  Q
    ||||||| |||  ||||||||||||| |||||||||||||| |||||| ||| ||||||  ||| |||||||    
T  4350842 ttgtttggattggcttatttgagcttctctactgacataagcacttaagagattgtttgagagaacttatga 4350771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 278
Target Start/End: Original strand, 21279967 - 21280026
Alignment:
Q  219 ttgtttgaatttacttatttgagcttatctactgacataagtacttaaaagactgtttgg 278  Q
    ||||||||||| ||||||||||| |||||  ||||||||| ||||||  |||||||||||    
T  21279967 ttgtttgaattgacttatttgagtttatcggctgacataaatacttacgagactgtttgg 21280026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 289
Target Start/End: Complemental strand, 13864771 - 13864717
Alignment:
Q  235 atttgagcttatctactgacataagtacttaaaagactgtttggaagagcttatg 289  Q
    ||||||||||||||||||||||||  | ||  |||||| ||||||||||||||||    
T  13864771 atttgagcttatctactgacataaacaattgtaagactatttggaagagcttatg 13864717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 231 - 285
Target Start/End: Original strand, 14277823 - 14277877
Alignment:
Q  231 acttatttgagcttatctactgacataagtacttaaaagactgtttggaagagct 285  Q
    ||||||||||| |||||||| |||||||||||||   ||| ||||||||||||||    
T  14277823 acttatttgagtttatctacggacataagtacttgtgagagtgtttggaagagct 14277877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 258
Target Start/End: Original strand, 18525160 - 18525198
Alignment:
Q  220 tgtttgaatttacttatttgagcttatctactgacataa 258  Q
    |||||||||| |||||||||||||||||||| |||||||    
T  18525160 tgtttgaattgacttatttgagcttatctacagacataa 18525198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 232 - 290
Target Start/End: Complemental strand, 26548592 - 26548534
Alignment:
Q  232 cttatttgagcttatctactgacataagtacttaaaagactgtttggaagagcttatga 290  Q
    ||||||||||||||||||| |||||||||| ||   ||||| |||||||| ||||||||    
T  26548592 cttatttgagcttatctaccgacataagtatttgtgagactatttggaagggcttatga 26548534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 30331904 - 30331862
Alignment:
Q  218 cttgtttgaatttacttatttgagcttatctactgacataagt 260  Q
    |||||||| ||| |||||||| |||||||||||||||||||||    
T  30331904 cttgtttggattgacttatttcagcttatctactgacataagt 30331862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 289
Target Start/End: Complemental strand, 25609935 - 25609878
Alignment:
Q  232 cttatttgagcttatctactgacataagtacttaaaagactgtttggaagagcttatg 289  Q
    |||||||||||||||||||| ||||||| ||||   |||||| |||||| ||||||||    
T  25609935 cttatttgagcttatctactaacataagaacttgtgagactgcttggaatagcttatg 25609878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 315
Target Start/End: Complemental strand, 29430896 - 29430812
Alignment:
Q  233 ttatttgagcttatctactgacataagtacttaaaagactgtttggaagagcttatg--attagcttatgtcatgtccataagct 315  Q
    ||||||||||||||||||||||||||  ||||    |||| ||||||||| ||||||  | ||||||||| ||||||||| ||||    
T  29430896 ttatttgagcttatctactgacataaacacttgtgggactatttggaagaacttatgaaaatagcttatgacatgtccattagct 29430812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 277
Target Start/End: Original strand, 40077430 - 40077487
Alignment:
Q  220 tgtttgaatttacttatttgagcttatctactgacataagtacttaaaagactgtttg 277  Q
    |||||||||| |||||| ||||||||| |||||||||||| ||||  |||||| ||||    
T  40077430 tgtttgaattgacttatctgagcttatgtactgacataagcacttctaagactctttg 40077487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 286
Target Start/End: Original strand, 43456627 - 43456692
Alignment:
Q  221 gtttgaatttacttatttgagcttatctactgacataagtacttaaaagactgtttggaagagctt 286  Q
    ||||| |||||||||||||| ||||| |||| ||||||  ||||  ||||||||||| ||||||||    
T  43456627 gtttggatttacttatttgaacttatttactcacataaacacttgtaagactgtttgaaagagctt 43456692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 13735994 - 13736026
Alignment:
Q  233 ttatttgagcttatctactgacataagtactta 265  Q
    ||||||||||||||||||| |||||||||||||    
T  13735994 ttatttgagcttatctactcacataagtactta 13736026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 220 - 260
Target Start/End: Complemental strand, 18179100 - 18179060
Alignment:
Q  220 tgtttgaatttacttatttgagcttatctactgacataagt 260  Q
    |||||| ||| ||||||||||||||||||||| ||||||||    
T  18179100 tgtttggattgacttatttgagcttatctactaacataagt 18179060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 220 - 260
Target Start/End: Complemental strand, 27317530 - 27317490
Alignment:
Q  220 tgtttgaatttacttatttgagcttatctactgacataagt 260  Q
    |||||| ||| |||||||||||||||||||| |||||||||    
T  27317530 tgtttggattgacttatttgagcttatctaccgacataagt 27317490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 40837354 - 40837394
Alignment:
Q  218 cttgtttgaatttacttatttgagcttatctactgacataa 258  Q
    |||||||| |||  |||||||||||||||||||||||||||    
T  40837354 cttgtttggattggcttatttgagcttatctactgacataa 40837394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 222 - 290
Target Start/End: Original strand, 42852623 - 42852691
Alignment:
Q  222 tttgaatttacttatttgagcttatctactgacataagtacttaaaagactgtttggaagagcttatga 290  Q
    |||| |||| ||||||||| ||||||| ||| |||||| ||||   ||||||||||||||||| |||||    
T  42852623 tttggatttgcttatttgaacttatctgctggcataagcacttgtgagactgtttggaagagcctatga 42852691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 232 - 316
Target Start/End: Complemental strand, 42647029 - 42646944
Alignment:
Q  232 cttatttgagcttatctactgacataagtacttaaaagactgtttggaagagcttatg--attagcttatgtcatgtccataagctc 316  Q
    ||||||||||||||||||||||||| || ||||  |||||| ||||||||| ||||||  | ||||||||| ||||| |||||||||    
T  42647029 cttatttgagcttatctactgacattagcactt-gaagactatttggaagaacttatgaaaatagcttatgacatgttcataagctc 42646944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 220 - 289
Target Start/End: Original strand, 11297115 - 11297184
Alignment:
Q  220 tgtttgaatttacttatttgagcttatctactgacataagtacttaaaagactgtttggaagagcttatg 289  Q
    |||||||||| |||||||| |||||||||| || |||||  ||||  ||||||||||| |||||||||||    
T  11297115 tgtttgaattgacttatttaagcttatctagtggcataaacacttgtaagactgtttgaaagagcttatg 11297184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 218 - 255
Target Start/End: Complemental strand, 28578998 - 28578961
Alignment:
Q  218 cttgtttgaatttacttatttgagcttatctactgaca 255  Q
    |||||||||||| |||||||||||||||||||||||||    
T  28578998 cttgtttgaattgacttatttgagcttatctactgaca 28578961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 290
Target Start/End: Complemental strand, 17498851 - 17498792
Alignment:
Q  231 acttatttgagcttatctactgacataagtacttaaaagactgtttggaagagcttatga 290  Q
    ||||||||||||||||||| |||| |||||||||   ||| ||||| |||||||||||||    
T  17498851 acttatttgagcttatctaatgacttaagtacttttgagattgttttgaagagcttatga 17498792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 285
Target Start/End: Complemental strand, 34975515 - 34975450
Alignment:
Q  219 ttgtttgaatttacttatttgagcttatctactgacataagtacttaaaagactgtttggaagagct 285  Q
    ||||||||||| ||||||| ||||||||||||| ||||||  |||||  |||||||||| |||||||    
T  34975515 ttgtttgaattgacttatt-gagcttatctactaacataatcacttatgagactgtttgaaagagct 34975450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 39594960 - 39594918
Alignment:
Q  218 cttgtttgaatttacttatttgagcttatctactgacataagt 260  Q
    |||||||| ||| |||||||||||||||||||| |||||||||    
T  39594960 cttgtttggattgacttatttgagcttatctaccgacataagt 39594918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 9711185 - 9711230
Alignment:
Q  219 ttgtttgaatttacttatttgagcttatctactgacataagtactt 264  Q
    |||||||||||| ||||||||| ||||||||||| |||||| ||||    
T  9711185 ttgtttgaattttcttatttgatcttatctactgccataagcactt 9711230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 288
Target Start/End: Complemental strand, 14980649 - 14980592
Alignment:
Q  231 acttatttgagcttatctactgacataagtacttaaaagactgtttggaagagcttat 288  Q
    |||||||||||||||||||||| |||||| |||  | ||||||||||  |||||||||    
T  14980649 acttatttgagcttatctactggcataagcactatagagactgtttgagagagcttat 14980592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 275
Target Start/End: Complemental strand, 33961832 - 33961779
Alignment:
Q  222 tttgaatttacttatttgagcttatctactgacataagtacttaaaagactgtt 275  Q
    |||||||| | |||||||||||||||||| |||||||| |||||  ||||||||    
T  33961832 tttgaattgaattatttgagcttatctacggacataagcacttatgagactgtt 33961779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 264
Target Start/End: Complemental strand, 37969017 - 37968984
Alignment:
Q  231 acttatttgagcttatctactgacataagtactt 264  Q
    |||| |||||||||||||||||||||||||||||    
T  37969017 acttgtttgagcttatctactgacataagtactt 37968984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 6723861 - 6723893
Alignment:
Q  220 tgtttgaatttacttatttgagcttatctactg 252  Q
    ||||||||||| |||||||||||||||||||||    
T  6723861 tgtttgaattttcttatttgagcttatctactg 6723893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 10791145 - 10791101
Alignment:
Q  220 tgtttgaatttacttatttgagcttatctactgacataagtactt 264  Q
    |||||||||| |||||||| |||||||| | ||||||||||||||    
T  10791145 tgtttgaattgacttatttcagcttatcaattgacataagtactt 10791101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 13781812 - 13781860
Alignment:
Q  238 tgagcttatctactgacataagtacttaaaagactgtttggaagagctt 286  Q
    |||||||||||||| ||||||||||||   ||||||||||| |||||||    
T  13781812 tgagcttatctactaacataagtacttgtgagactgtttggtagagctt 13781860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 220 - 260
Target Start/End: Complemental strand, 15246984 - 15246944
Alignment:
Q  220 tgtttgaatttacttatttgagcttatctactgacataagt 260  Q
    |||||| ||||  ||||||||||||||||||||||||||||    
T  15246984 tgtttggatttgtttatttgagcttatctactgacataagt 15246944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 36796624 - 36796664
Alignment:
Q  218 cttgtttgaatttacttatttgagcttatctactgacataa 258  Q
    |||||||| ||| ||||||||||||||||||| ||||||||    
T  36796624 cttgtttggattgacttatttgagcttatctaatgacataa 36796664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 490
Target Start/End: Original strand, 39257542 - 39257578
Alignment:
Q  454 ctataagcgcttaattaagtagtttatctaaacaagg 490  Q
    |||||||||||||||||||| ||||||| ||||||||    
T  39257542 ctataagcgcttaattaagttgtttatccaaacaagg 39257578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 220 - 277
Target Start/End: Original strand, 30536884 - 30536941
Alignment:
Q  220 tgtttgaatttacttatttgagcttatctactgacataagtacttaaaagactgtttg 277  Q
    |||||| ||| ||||||||||| ||||||||| |||||||||||||  ||||||||||    
T  30536884 tgtttggattgacttatttgagtttatctacttacataagtacttattagactgtttg 30536941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 35070382 - 35070430
Alignment:
Q  216 gacttgtttgaatttacttatttgagcttatctactgacataagtactt 264  Q
    |||||||||| |||| |||||||||||||||||||| ||||||| ||||    
T  35070382 gacttgtttggattttcttatttgagcttatctactaacataagcactt 35070430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 258
Target Start/End: Complemental strand, 13908392 - 13908353
Alignment:
Q  219 ttgtttgaatttacttatttgagcttatctactgacataa 258  Q
    ||||||||||| |||||||||| |||||||||||||||||    
T  13908392 ttgtttgaattgacttatttgaacttatctactgacataa 13908353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 264
Target Start/End: Complemental strand, 32916989 - 32916943
Alignment:
Q  217 acttgtttgaatttacttatttgagcttatctactgacataagtactt 264  Q
    ||||||||| |||| ||||||||||||||||||| |||||||||||||    
T  32916989 acttgtttggattt-cttatttgagcttatctacagacataagtactt 32916943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 223 - 289
Target Start/End: Complemental strand, 2455958 - 2455892
Alignment:
Q  223 ttgaatttacttatttgagcttatctactgacataagtacttaaaagactgtttggaagagcttatg 289  Q
    ||||||| |||||||||||||||||||| | |||||| ||||   ||| ||||| ||||||||||||    
T  2455958 ttgaattgacttatttgagcttatctaccggcataagcacttgcgagattgtttagaagagcttatg 2455892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 290
Target Start/End: Complemental strand, 29249544 - 29249474
Alignment:
Q  220 tgtttgaatttacttatttgagcttatctactgacataagtacttaaaagactgtttggaagagcttatga 290  Q
    |||||| ||| |||||||||||||||| |||||  ||||||||||  |||||||||| | ||| |||||||    
T  29249544 tgtttggattgacttatttgagcttatttactgttataagtacttgtaagactgtttcgtagatcttatga 29249474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 232 - 290
Target Start/End: Complemental strand, 31774516 - 31774458
Alignment:
Q  232 cttatttgagcttatctactgacataagtacttaaaagactgtttggaagagcttatga 290  Q
    |||||||||| |||||||| | |||||| |||||  |||||||||||||||||| ||||    
T  31774516 cttatttgagtttatctaccggcataagcacttatgagactgtttggaagagctcatga 31774458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 32976110 - 32976061
Alignment:
Q  239 gagcttatctactgacataagtacttaaaagactgtttggaagagcttat 288  Q
    |||||||| ||||| |||||||||||   |||||||||||||||||||||    
T  32976110 gagcttatttactggcataagtacttgtgagactgtttggaagagcttat 32976061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 364 - 407
Target Start/End: Complemental strand, 4248963 - 4248919
Alignment:
Q  364 cttattgtttatacaaaaacaattcgac-ttattttatcttttgt 407  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||||    
T  4248963 cttattgtttatacaaaatcaatttgactttattttatcttttgt 4248919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 7351590 - 7351634
Alignment:
Q  220 tgtttgaatttacttatttgagcttatctactgacataagtactt 264  Q
    ||||| |||| ||||||||||| ||||||||||||||||| ||||    
T  7351590 tgtttaaattgacttatttgagtttatctactgacataagcactt 7351634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 220 - 260
Target Start/End: Original strand, 21405073 - 21405113
Alignment:
Q  220 tgtttgaatttacttatttgagcttatctactgacataagt 260  Q
    |||||| ||| |||||||||||||||| |||||||||||||    
T  21405073 tgtttggattgacttatttgagcttatatactgacataagt 21405113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 291
Target Start/End: Complemental strand, 27894169 - 27894113
Alignment:
Q  235 atttgagcttatctactgacataagtacttaaaagactgtttggaagagcttatgat 291  Q
    ||||||||||| |||| |||||||||||||   |||||||||| | |||||||||||    
T  27894169 atttgagcttacctacggacataagtacttgtgagactgtttgaacgagcttatgat 27894113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 220 - 260
Target Start/End: Original strand, 34404645 - 34404685
Alignment:
Q  220 tgtttgaatttacttatttgagcttatctactgacataagt 260  Q
    |||||| ||||||||||||||| ||||| ||||||||||||    
T  34404645 tgtttggatttacttatttgagtttatcaactgacataagt 34404685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 232 - 260
Target Start/End: Original strand, 35069543 - 35069571
Alignment:
Q  232 cttatttgagcttatctactgacataagt 260  Q
    |||||||||||||||||||||||||||||    
T  35069543 cttatttgagcttatctactgacataagt 35069571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 332
Target Start/End: Complemental strand, 27711 - 27613
Alignment:
Q  236 tttgagcttatctactgacataagtacttaaaagactgtttggaagagcttatg--attagcttatgtcatgtccataagctcatttcagtttatttcc 332  Q
    |||||||| ||||||||||||| ||||||   ||||||||||| ||||||||||  | ||||||||| |||| | ||||| |  |||||| ||||||||    
T  27711 tttgagctgatctactgacatatgtacttctgagactgtttgggagagcttatggaaatagcttatgacatggctataagttgttttcagcttatttcc 27613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University