View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20926_high_8 (Length: 459)
Name: NF20926_high_8
Description: NF20926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20926_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Complemental strand, 36886665 - 36886224
Alignment:
| Q |
1 |
tgaatatttaaggactgagttatatacaacatgcaagtatatttctaaggatcagaataccagttgattagttatgttcatattgattttagaccaagct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36886665 |
tgaatatttaaggactgagttatatacaacatgcaagtatatttctaaggatcagaataccagttgattagttatgttcatattgattttagaccaagct |
36886566 |
T |
|
| Q |
101 |
taatagacatgataataatacagagcaacagctaaagccnnnnnnnactagcagggttgactactgtatctcatgatgccataatgtctttatcagttga |
200 |
Q |
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| T |
36886565 |
taatagacatgataataatacagagcaacagctaaagcctttttttactagtagggttgactactgtatctcatgatgccataatgtctttatcagttga |
36886466 |
T |
|
| Q |
201 |
aaataaaatgtttacattttttcgtctcttttgagcatatgatatattataatgattgggcgctttactagtagctgtgcaagtacaatcatctttttta |
300 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36886465 |
aaataaaatgtttacattttttcatctcttttgagcatatgatatattataatgattgggcgctttactagtagctgtgcaagtacaatcatctttttta |
36886366 |
T |
|
| Q |
301 |
tcttgtgttgcaggaatttaagccacaatttcttaattggacccattggtgacgtatttactggcttagataatctcaaagaaatgtatggcttcttctt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36886365 |
tcttgtgttgcaggaatttaagccacaatttcttaattggacccattggtgacgtatttactggcttagataatctcaaagaaatgtatggcttcttctt |
36886266 |
T |
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| Q |
401 |
ttggattttttgatatcacagtacgatttaaataaaatgaat |
442 |
Q |
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| T |
36886265 |
ttggattttttgatatcacagtacgatttaaataaaatgaat |
36886224 |
T |
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Back To:
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Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 303 - 398
Target Start/End: Complemental strand, 22556834 - 22556739
Alignment:
| Q |
303 |
ttgtgttgcaggaatttaagccacaatttcttaattggacccattggtgacgtatttactggcttagataatctcaaagaaatgtatggcttcttc |
398 |
Q |
| |
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|||| |||||||||||||||||||||||||||| |||||| ||||| | || || || |||||||||||||||||||||||||||| ||||||| |
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| T |
22556834 |
ttgtcttgcaggaatttaagccacaatttcttatatggaccaattggcaatgtgttcacaggcttagataatctcaaagaaatgtatgtcttcttc |
22556739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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