View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20926_high_9 (Length: 441)
Name: NF20926_high_9
Description: NF20926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20926_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 23 - 430
Target Start/End: Complemental strand, 13795147 - 13794740
Alignment:
| Q |
23 |
aagtgaagatctaatttgtaacataatatcttaataattcgacaactgatagttgatggcacaaacaagatgctggagagatctttcatttcttactgac |
122 |
Q |
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| T |
13795147 |
aagtgaagatctaatttgtaacataatatcttaataattcgacaactgatagttgatggcacaaacaagatgctggagagatctttcatttcttactgac |
13795048 |
T |
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| Q |
123 |
tcatgataactcatcatgcttgaatgcaataatacccgatatttttacgcacagtgtgatctgaatcaatgggatcaacgagtttatttgaagtcaaaag |
222 |
Q |
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| T |
13795047 |
tcatgataactcgtcatgcttgaatgcgataatacccgatatttttacgcacagtgtgatctgaatcaatgggatcaacgagtttacttgaagtcaaaag |
13794948 |
T |
|
| Q |
223 |
aacatttcttagcaatcctcgtaatctttttcaataaatgaatcatctacaattttaaataatatttagtaaacaaaacatatttacatttcgtttccgg |
322 |
Q |
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| T |
13794947 |
aacatttcttagcaatcctcgtaatctttttcaataaatgaatcatctacaattttaaataataattagtaaacaaaacatatttacatttcgtttccgg |
13794848 |
T |
|
| Q |
323 |
tggtgacaagtgaaaaacatgtctaactttcctttttgttaaccctaacttttttcaacaagttgagtttctctcaatcttgttttattttcaaaattac |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13794847 |
tggtgacaagtgaaaaacatgtctaactttcctttttgttaaccctaacttttttcaacaagttgagtttctctcaatcttgttttattttcaaaattac |
13794748 |
T |
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| Q |
423 |
ctttgcta |
430 |
Q |
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|||||||| |
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| T |
13794747 |
ctttgcta |
13794740 |
T |
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