View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20926_low_1 (Length: 805)

Name: NF20926_low_1
Description: NF20926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20926_low_1
NF20926_low_1
[»] chr2 (2 HSPs)
chr2 (17-800)||(33815057-33815840)
chr2 (382-417)||(32271385-32271420)
[»] chr8 (1 HSPs)
chr8 (382-417)||(21634847-21634882)
[»] chr7 (8 HSPs)
chr7 (382-417)||(32089306-32089341)
chr7 (382-417)||(32093063-32093098)
chr7 (382-417)||(32096779-32096814)
chr7 (382-417)||(39128533-39128568)
chr7 (382-417)||(39478477-39478512)
chr7 (382-417)||(41706670-41706705)
chr7 (382-417)||(41812181-41812216)
chr7 (127-180)||(24177714-24177767)
[»] chr6 (2 HSPs)
chr6 (382-417)||(26217275-26217310)
chr6 (383-417)||(11187926-11187960)
[»] chr5 (1 HSPs)
chr5 (115-182)||(38683975-38684042)
[»] chr3 (3 HSPs)
chr3 (382-417)||(38044562-38044597)
chr3 (382-417)||(48838007-48838042)
chr3 (382-417)||(50152374-50152409)
[»] chr1 (2 HSPs)
chr1 (382-417)||(31141989-31142024)
chr1 (115-178)||(51234326-51234389)
[»] chr4 (2 HSPs)
chr4 (382-416)||(7772341-7772375)
chr4 (382-416)||(7777949-7777983)


Alignment Details
Target: chr2 (Bit Score: 664; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 664; E-Value: 0
Query Start/End: Original strand, 17 - 800
Target Start/End: Complemental strand, 33815840 - 33815057
Alignment:
Q  17 aaatgcaacaatgaataacatgcattcaagatcctaagcacaccttaggataggtttaagtggggaaactataggttacctcttagaagcacaccttttc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33815840 aaatgcaacaatgaataacatgcattcaagatcctaagcacaccttaggataggtttaagtggggaaactataggttacctcttagaagcacaccttttc 33815741  T
Q  117 catttgaatcaccc---aacttaaatttgatgatttgcatctacttccatttctccgtcgttttgtaagtgnnnnnnnnagggaaggtgttaaatgagtg 213  Q
    ||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||    
T  33815740 catttgaatcaccccccaacttaaatttgatgatttgcatctacttccatttctccgtcgttttgtaagtgttttttatagggaaggtgttaaatgagtg 33815641  T
Q  214 ttgaaaagttagagtcgttcaaataatataagagctcaaatgaataatttggtaagttgcggtgcatgttgtttcttagttgtcgcagaagttccacatt 313  Q
    |||||||||||||||||| ||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33815640 ttgaaaagttagagtcgtccaaata---taagagctcaaatgaataatttggtaagttgcggtgcatgttgtttcttagttgtcgcagaagttccacatt 33815544  T
Q  314 gcttaatctttccacatatttagtgtgtgtataatgtgcacactccacaaacaaatgtttctttgaggtaaaattggaacgatacaaagaagattagcat 413  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33815543 gcttaatctttccacatatttagtgtgtatataatgtgcacactccacaaacaaatgtttctttgaggtaaaattggaacgatacgaagaagattagcat 33815444  T
Q  414 ggcctcctcatcgaggatgacacgcacatattaagatacggtccnnnnnnnnnnnnnnnnntcctgtggctttatcttcttccattgcttcttttctgca 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||                 ||| |||||||||||||||||||||||||||||||||||    
T  33815443 ggcctcctcatcgaggatgacacgcacatattaagatacggtccaaaaaacaaaacaaaaatcccgtggctttatcttcttccattgcttcttttctgca 33815344  T
Q  514 ggtaagcttctcatatcttcaccatcctggtaatcgcttctcttttcaaccatattttcatcatccttcaagcttccatatgcaggaaactcagtcacat 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33815343 ggtaagcttctcatatcttcaccatcctggtaatcgcttctcttttcaaccatattttcatcatccttcaagcttccatatgcaggaaactcagtcacat 33815244  T
Q  614 tgaaccagtgacattattcaaaacttgacaatgtttagggtttatgcataatctgattaacattgctcaacaaattgattaaaattttgacatgtctcag 713  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33815243 tgaaccagtgacattattcaaaacttgacaatgtttagggtttatgcataatctgattaacattgctcaacaaattgattaaaattttgacatgtctcag 33815144  T
Q  714 aaaaatggactattgaatgtagctacttcattttagaagatgatttgatatgtgttgtttttatttgtcttggttctctgtgttgct 800  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  33815143 aaaaatggactattgaatgtagctacttcattttagaagatgatttgatatgtgttgtttttatttgtcttggttccctgtgttgct 33815057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 417
Target Start/End: Complemental strand, 32271420 - 32271385
Alignment:
Q  382 taaaattggaacgatacaaagaagattagcatggcc 417  Q
    |||||||||||||||||||||||||||| |||||||    
T  32271420 taaaattggaacgatacaaagaagattatcatggcc 32271385  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 417
Target Start/End: Complemental strand, 21634882 - 21634847
Alignment:
Q  382 taaaattggaacgatacaaagaagattagcatggcc 417  Q
    |||||||||||||||||| |||||||||||||||||    
T  21634882 taaaattggaacgatacagagaagattagcatggcc 21634847  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 417
Target Start/End: Complemental strand, 32089341 - 32089306
Alignment:
Q  382 taaaattggaacgatacaaagaagattagcatggcc 417  Q
    |||||||||||||||||| |||||||||||||||||    
T  32089341 taaaattggaacgatacagagaagattagcatggcc 32089306  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 417
Target Start/End: Complemental strand, 32093098 - 32093063
Alignment:
Q  382 taaaattggaacgatacaaagaagattagcatggcc 417  Q
    |||||||||||||||||| |||||||||||||||||    
T  32093098 taaaattggaacgatacagagaagattagcatggcc 32093063  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 417
Target Start/End: Complemental strand, 32096814 - 32096779
Alignment:
Q  382 taaaattggaacgatacaaagaagattagcatggcc 417  Q
    |||||||||||||||||| |||||||||||||||||    
T  32096814 taaaattggaacgatacagagaagattagcatggcc 32096779  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 417
Target Start/End: Complemental strand, 39128568 - 39128533
Alignment:
Q  382 taaaattggaacgatacaaagaagattagcatggcc 417  Q
    |||||||||||||||||| |||||||||||||||||    
T  39128568 taaaattggaacgatacagagaagattagcatggcc 39128533  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 417
Target Start/End: Original strand, 39478477 - 39478512
Alignment:
Q  382 taaaattggaacgatacaaagaagattagcatggcc 417  Q
    |||||||||||||||||| |||||||||||||||||    
T  39478477 taaaattggaacgatacagagaagattagcatggcc 39478512  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 417
Target Start/End: Complemental strand, 41706705 - 41706670
Alignment:
Q  382 taaaattggaacgatacaaagaagattagcatggcc 417  Q
    |||||||||||||||||| |||||||||||||||||    
T  41706705 taaaattggaacgatacagagaagattagcatggcc 41706670  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 417
Target Start/End: Original strand, 41812181 - 41812216
Alignment:
Q  382 taaaattggaacgatacaaagaagattagcatggcc 417  Q
    |||||||||||||||||| |||||||||||||||||    
T  41812181 taaaattggaacgatacagagaagattagcatggcc 41812216  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 24177714 - 24177767
Alignment:
Q  127 acccaacttaaatttgatgatttgcatctacttccatttctccgtcgttttgta 180  Q
    ||||||||| ||| ||||||||| ||||| |||| ||||||||||| |||||||    
T  24177714 acccaacttgaatatgatgatttacatctgcttctatttctccgtcattttgta 24177767  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 417
Target Start/End: Complemental strand, 26217310 - 26217275
Alignment:
Q  382 taaaattggaacgatacaaagaagattagcatggcc 417  Q
    |||||||||||||||||| |||||||||||||||||    
T  26217310 taaaattggaacgatacagagaagattagcatggcc 26217275  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 383 - 417
Target Start/End: Original strand, 11187926 - 11187960
Alignment:
Q  383 aaaattggaacgatacaaagaagattagcatggcc 417  Q
    ||||||||||||||||| |||||||||||||||||    
T  11187926 aaaattggaacgatacagagaagattagcatggcc 11187960  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 182
Target Start/End: Complemental strand, 38684042 - 38683975
Alignment:
Q  115 tccatttgaatcacccaacttaaatttgatgatttgcatctacttccatttctccgtcgttttgtaag 182  Q
    ||||||| || |||||||||| | ||||||| ||| ||||| |||  |||||||||||||||||||||    
T  38684042 tccatttcaagcacccaacttgattttgatggttttcatctcctttaatttctccgtcgttttgtaag 38683975  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 417
Target Start/End: Complemental strand, 38044597 - 38044562
Alignment:
Q  382 taaaattggaacgatacaaagaagattagcatggcc 417  Q
    |||||||||||||||||| |||||||||||||||||    
T  38044597 taaaattggaacgatacagagaagattagcatggcc 38044562  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 417
Target Start/End: Original strand, 48838007 - 48838042
Alignment:
Q  382 taaaattggaacgatacaaagaagattagcatggcc 417  Q
    |||||||||||||||||| |||||||||||||||||    
T  48838007 taaaattggaacgatacagagaagattagcatggcc 48838042  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 417
Target Start/End: Original strand, 50152374 - 50152409
Alignment:
Q  382 taaaattggaacgatacaaagaagattagcatggcc 417  Q
    |||||||||||||||||| |||||||||||||||||    
T  50152374 taaaattggaacgatacagagaagattagcatggcc 50152409  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 417
Target Start/End: Complemental strand, 31142024 - 31141989
Alignment:
Q  382 taaaattggaacgatacaaagaagattagcatggcc 417  Q
    |||||||||||||||||| |||||||||||||||||    
T  31142024 taaaattggaacgatacagagaagattagcatggcc 31141989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 178
Target Start/End: Complemental strand, 51234389 - 51234326
Alignment:
Q  115 tccatttgaatcacccaacttaaatttgatgatttgcatctacttccatttctccgtcgttttg 178  Q
    ||||||| || |||||||||| ||||||||||||| ||||| |||| |||||||| || |||||    
T  51234389 tccatttcaaccacccaacttgaatttgatgatttacatctgcttcaatttctccatcattttg 51234326  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 382 - 416
Target Start/End: Complemental strand, 7772375 - 7772341
Alignment:
Q  382 taaaattggaacgatacaaagaagattagcatggc 416  Q
    |||||||||||||||||| ||||||||||||||||    
T  7772375 taaaattggaacgatacagagaagattagcatggc 7772341  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 382 - 416
Target Start/End: Complemental strand, 7777983 - 7777949
Alignment:
Q  382 taaaattggaacgatacaaagaagattagcatggc 416  Q
    |||||||||||||||||| ||||||||||||||||    
T  7777983 taaaattggaacgatacagagaagattagcatggc 7777949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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