View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20926_low_10 (Length: 437)
Name: NF20926_low_10
Description: NF20926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20926_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 15 - 421
Target Start/End: Complemental strand, 54738367 - 54737961
Alignment:
| Q |
15 |
gaagtgaaaagcagtccacttatttatttctctactgctcctcaaaatgaatttttctataaacccattgaatacccttgacttggaatcaccaatcctt |
114 |
Q |
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| T |
54738367 |
gaagtgaaaagcagtccacttatttatttctctactgctcctcaaaatgaatttttctataaacccattgaatacccttgacttggaatcaccaatcctt |
54738268 |
T |
|
| Q |
115 |
tgcaataccatcgttattttgtttggatttcactatatactactcattttcctagtaatagttgatgatgacaactgtcctatatatttatcaagtccct |
214 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54738267 |
tgcaataccatcgttattttgtttggatttcactctatactactcattttcctagtaatagttgatgatgacaactgtcctatatatttatcaagtccct |
54738168 |
T |
|
| Q |
215 |
taggttgaagatatgtttgagttgaatggtaggttgaattatattcttcatctacaaagtaaagattgggtagtacgatagtacgatttctatggacagc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
54738167 |
taggttgaagatatgtttgagttgaatggtaggttgaattatattcttcatctacaaagtaaagattgggtagtacgatagtacgagttctatggacagc |
54738068 |
T |
|
| Q |
315 |
acaaacctacacatctgagacaaaaataatgaacccaaacatttcaggttcaatctatcaagctttaacttagatggtatgcacataactataaatagca |
414 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54738067 |
acaaacctacacatctgagacaaaaataacgaacccaaacatttcaggttcaatctatcaagctttaacttagatggtatgcacataactataaatagca |
54737968 |
T |
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| Q |
415 |
tgaagct |
421 |
Q |
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||||||| |
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| T |
54737967 |
tgaagct |
54737961 |
T |
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