View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20926_low_11 (Length: 410)
Name: NF20926_low_11
Description: NF20926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20926_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 19 - 406
Target Start/End: Complemental strand, 54729121 - 54728734
Alignment:
| Q |
19 |
attattcaccttgcttctcacaagtagaataataaacactgttgagaactactacgctcattcatttctaagcaagttactgaattttacttgaaaacat |
118 |
Q |
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| T |
54729121 |
attattcaccttgcttctgacaagtagaataataaacactgttgagaactactacgatcattcatttctaagcaagttactcaattttacttcaaaacat |
54729022 |
T |
|
| Q |
119 |
ttttctgcatggaatatatatattagcacatccttctcttcctaaagcaagataactaaatgatgnnnnnnnttcaaaagatagggacaaattgagataa |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
54729021 |
ttttctgcatggaatatatatattagcacatccttctcttcctaaagcaagataactaaatgatgaaaaaaattcaaaagatagggacaaattgagataa |
54728922 |
T |
|
| Q |
219 |
gataattaacgctggatcacttggaaccaccaaaacaattaaagtttgtccctagccataggacaaagctatttgtggctcaccttctctttacaccata |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
54728921 |
gataattaacgctggatcacttggaaccaccaaaacaattcaagtttgtccctagtcacaggacaaagctatttgtggctcaccttctctttacaccata |
54728822 |
T |
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| Q |
319 |
aatattgattgtcactcaccaaacaatcaacaagaaaaccaaatcaactatattaaccagacactcctcctactctcttcttctctct |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54728821 |
aatattgattgtcactcaccaaacaatcaacaagaaaaccaaatcaactatattaaccagacactcctcctactctcttcttctctct |
54728734 |
T |
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