View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20926_low_12 (Length: 397)
Name: NF20926_low_12
Description: NF20926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20926_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 382
Target Start/End: Complemental strand, 6567787 - 6567423
Alignment:
| Q |
18 |
aactaactcagtcattacattacaagttacaatacatcttaagttttgaaactaactcaatcattacgttacaagttacaagtcagtttttaggtcattt |
117 |
Q |
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| T |
6567787 |
aactaactcagtcattacattacaagttacaatacatcttaagttttgaaactaactcaatcattacgttacaagttacaagtcagtttttaggtcattt |
6567688 |
T |
|
| Q |
118 |
ctctagtgaaggtgagatttggattannnnnnnccaacacaattatccttagcacctaatctatcctagatatttcaattctcagcatcaaaccattaca |
217 |
Q |
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| T |
6567687 |
ctctagtgaaggtgagatttggattatttttttccaacacaattatccttagcacctaatctatcctagatatttcaattctcagcatcaaaccattaca |
6567588 |
T |
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| Q |
218 |
taacatcctgaaacaaattttcatatatactggtcataaggaaatcatatattgttagactagatgatcacttatgaagacattaaggaatatctgaaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6567587 |
taacatcctgaaacaaattttcatatatactggtcataaggaaatcatatattgttagactagatgatcacttatgaagacattaaggaatatctgaaaa |
6567488 |
T |
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| Q |
318 |
cgaaaatagttagtgtccacacgatgctattttcatctaaatagagaaacaaacataccacaggt |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6567487 |
cgaaaatagttagtgtccacacgatgctattttcatctaaattgagaaacaaacataccacaggt |
6567423 |
T |
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