View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20926_low_13 (Length: 395)
Name: NF20926_low_13
Description: NF20926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20926_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 387
Target Start/End: Complemental strand, 30437157 - 30436789
Alignment:
| Q |
18 |
agaggcaccaccctatacagagccnnnnnnnnntagccaaggaaggtaaggtaaggatcatgaactaaacaattcaaaccacaaataactacataattag |
117 |
Q |
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| T |
30437157 |
agaggcaccaccctatacagagccaaaaaaaa-tagccaaggaaggtaaggtaaggatcatgaactaaacaattcaaaccacaaataactacataattag |
30437059 |
T |
|
| Q |
118 |
tagaatagttgaatccttaattagtagagtatgtgatattagttaataaatccctcatagttatttatacctacatgatcacaagttatgtagctccgag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30437058 |
tagaatagttgaatccttaattagtagagtatgtgatattagttaataaatccctcatagttatttatacctacatgatcacaagttatgtagctccgag |
30436959 |
T |
|
| Q |
218 |
acatcatattgaaggcatgtccaggcgttcaaccaacacttgcatatgtggctacatccaattacttctattttcttaaatcattacttgtgtttacgtg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
30436958 |
acatcatattgaaggcatgtccaggcgttcaaccaacacttgcatatgtggctacatccaattacttctattttcttaaatcgttacttgtgtttacgtg |
30436859 |
T |
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| Q |
318 |
ttagagctttgtatatcatgagtgcccaaacaacaacatccctaacaactatacttaatagacctttgct |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30436858 |
ttagagctttgtatatcatgagtgcccaaacaacaacatccctaacaactatacttaatagacctttgct |
30436789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 30271731 - 30271683
Alignment:
| Q |
270 |
tacatccaattacttctattttcttaaatcattacttgtgtttacgtgt |
318 |
Q |
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| T |
30271731 |
tacattcaatcacttctatattcttaaatcattactggtgtttacgtgt |
30271683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 29360448 - 29360496
Alignment:
| Q |
270 |
tacatccaattacttctattttcttaaatcattacttgtgtttacgtgt |
318 |
Q |
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||||| |||| |||| ||| |||||||||||||||| |||||||||||| |
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| T |
29360448 |
tacattcaatcacttttatattcttaaatcattactggtgtttacgtgt |
29360496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 310
Target Start/End: Complemental strand, 26073267 - 26073227
Alignment:
| Q |
270 |
tacatccaattacttctattttcttaaatcattacttgtgt |
310 |
Q |
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| T |
26073267 |
tacattcaattacttctactttcttaaattattacttgtgt |
26073227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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