View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20926_low_14 (Length: 392)
Name: NF20926_low_14
Description: NF20926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20926_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 13 - 375
Target Start/End: Original strand, 44892316 - 44892678
Alignment:
| Q |
13 |
aatatcaaggccaaggaagaggaggaaaggatcactaatatggaggagggaacaattggtaaatcatcaagaccatcacaacacaagaaaactgatttga |
112 |
Q |
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| T |
44892316 |
aatatcaaggccaaggaagaggaggaaaggatcactaatatggaggagggaacaattggtaaatcatcaagaccatcagaacacaagaaaactgatttga |
44892415 |
T |
|
| Q |
113 |
gtaactttaaaactagaaaggcttatttttactggatggctggtgaacaaggtttctttgattggtttaaaggggtaataaatgaggtggctgaagagga |
212 |
Q |
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| T |
44892416 |
gtaactttaaaactagaaaggcttatttttactggatggctggtgaacaaggtttctttgattggtttaaaggggtaataaatgaggtggctgaagagga |
44892515 |
T |
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| Q |
213 |
tcacaagaaagtaattgagatacacagtcacttgactagtgtatatgaagacggtgatgctcgctctgctcttgttactgtccttcaatcactaaaccat |
312 |
Q |
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| T |
44892516 |
tcacaagaaagtaattgagatacacagtcacttgactagtgtatatgaagacggtgatgctcgctctgctcttgttactgtccttcaatcactaaaccat |
44892615 |
T |
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| Q |
313 |
gctaaaaaaggtttggatatcttaaatggaacacccatcgcgtcttactttgcacgacccaat |
375 |
Q |
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| T |
44892616 |
gctaaagaaggtttggatatcttaaatggaacacccatcgcgtcttactttgcacgacccaat |
44892678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 58 - 365
Target Start/End: Original strand, 44901014 - 44901321
Alignment:
| Q |
58 |
gagggaacaattggtaaatcatcaagaccatcacaacacaagaaaactgatttgagtaactttaaaactagaaaggcttatttttactggatggctggtg |
157 |
Q |
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| T |
44901014 |
gagggaacaggtggcaaatcaccaagatcatcacaacgcaagaaaaccggtttaaataacttcaaaactagaaaggcttatttttattgggtggcggcga |
44901113 |
T |
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| Q |
158 |
aacaaggtttctttgattggtttaaaggggtaataaatgaggtggctgaagaggatcacaagaaagtaattgagatacacagtcacttgactagtgtata |
257 |
Q |
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| T |
44901114 |
aacaaggtttctttgattggtttaaagatgtaatgaatgaggtggtggaagaagaccgtaggagagtaattgagatccacagtcacttgactagtgtata |
44901213 |
T |
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| Q |
258 |
tgaagacggtgatgctcgctctgctcttgttactgtccttcaatcactaaaccatgctaaaaaaggtttggatatcttaaatggaacacccatcgcgtct |
357 |
Q |
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| T |
44901214 |
tgaagacggtgatgctcaatctgctcttattgctatgcttcaatcactaaaccatgctaaaaatggtgtggatatcttgactggaacacccgtcaagtct |
44901313 |
T |
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| Q |
358 |
tactttgc |
365 |
Q |
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||||||| |
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| T |
44901314 |
cactttgc |
44901321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 55 - 333
Target Start/End: Original strand, 44917761 - 44918039
Alignment:
| Q |
55 |
gaggagggaacaattggtaaatcatcaagaccatcacaacacaagaaaactgatttgagtaactttaaaactagaaaggcttatttttactggatggctg |
154 |
Q |
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||||||||||||| | |||||||| | ||||||||||||||||||| ||| | ||||| || ||||||||||| | |||||||||||||||| | || |
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| T |
44917761 |
gaggagggaacaagtagtaaatcaccgagaccatcacaacacaagagaaccggtttgaatagctttaaaactaagagggcttatttttactgggttacta |
44917860 |
T |
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| Q |
155 |
gtgaacaaggtttctttgattggtttaaaggggtaataaatgaggtggctgaagaggatcacaagaaagtaattgagatacacagtcacttgactagtgt |
254 |
Q |
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| T |
44917861 |
gagaacagggttcatttgattggtttaaaggagtaatgaatgaggtggctgaagatgatcataggggagtaattgagctacacaattattgtactagtgt |
44917960 |
T |
|
| Q |
255 |
atatgaagacggtgatgctcgctctgctcttgttactgtccttcaatcactaaaccatgctaaaaaaggtttggatatc |
333 |
Q |
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| T |
44917961 |
ttatgaagagggtgatgctcgctctgctcttattgctatgctccaatcacttaatcatgctaaaaatggtgtggatatc |
44918039 |
T |
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