View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20926_low_16 (Length: 391)
Name: NF20926_low_16
Description: NF20926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20926_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 4 - 372
Target Start/End: Original strand, 5171759 - 5172122
Alignment:
| Q |
4 |
cggtagttaactgccgctgatattgaatgaacatcaattaactactgtgaataaacgaacgaatgatagttaactgcggttgaaatagcaagtgcctaaa |
103 |
Q |
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| T |
5171759 |
cggtagttaactgccgctgatattgaatgaacatcaattaaatactgtaaataaacgaa----tgatagttaactgccgttgaaatagcaagtgcctaaa |
5171854 |
T |
|
| Q |
104 |
gagcaattatctttccaactgagtacataactgcctccgctagaggtaacaaagggcccaacataaaagcacagtttatatagacacaacaacaaactgt |
203 |
Q |
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||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5171855 |
gagcaattatctt-ccaactgagcacataactgcctccgctagaggtaacaaagggcccaacataaaagcacaggttatatagacacaacaacaaactgt |
5171953 |
T |
|
| Q |
204 |
tagtgttgggtacaacagccacgtttcaatctgtaaaattcagttgtgttaggaatgatgaaggggtcctacgagatttctatggtgagaaatatgagct |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5171954 |
tagtgttgggtacaacagccacgtttcaatctgtaaaattcagctgtgttaggaatgatgaaggggtcctacgagatttctatggtgagaaatatgagct |
5172053 |
T |
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| Q |
304 |
ttaagcttaatacagaaaatatgaggccttatatcatcttggatcttccacctctcatagcgcaataat |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5172054 |
ttaagcttaatacagaaaatatgaggccttatatcatcttggatcttccacctctcatagcgcaataat |
5172122 |
T |
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