View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20926_low_17 (Length: 385)
Name: NF20926_low_17
Description: NF20926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20926_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 22 - 369
Target Start/End: Original strand, 35179073 - 35179415
Alignment:
| Q |
22 |
gaatagtgtgagagaatgtattaggaccacaagtggtatatggtcttaccatttctttgtcgtgaactagctagagggcaacagaaaaagttggtggaat |
121 |
Q |
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| T |
35179073 |
gaatagtgtgagagaatgtattaggaccacaagtggtatatggtcttaccatttctttgtcgtgaactagctagagggcaacagaaaaagttggtggaat |
35179172 |
T |
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| Q |
122 |
taaaagcctttgataggtatgaatagtacaagaagacctagtgaagactataagcaaacccttgtcctcactctccttaattactattgtggacttttct |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35179173 |
taaaagcctttgataggtatgaatagtacaagaagacctagtgaagactataagcaaacccttgtcctcattctccttaattactattgtggacttttct |
35179272 |
T |
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| Q |
222 |
ttagacaaagaatttttgcgaaaataatgatagatgagtaagtgggtcgaatctgattcctcctattgatgggaaaaatgttgccttatttagtgcctct |
321 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35179273 |
ttagacaaagaa-ttttgcgaaaataatgatagatgagtaagtgggtcgaatctgattcctcctattgatgggaaaaatgttgccttatttagtgcctct |
35179371 |
T |
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| Q |
322 |
caatcatgtgtccaagtatttatttccttatattctaccatggcggct |
369 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
35179372 |
caatcatgtgtccaag----tatttccttatattctaccatggcggct |
35179415 |
T |
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