View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20926_low_18 (Length: 384)
Name: NF20926_low_18
Description: NF20926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20926_low_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 164 - 367
Target Start/End: Complemental strand, 33488937 - 33488734
Alignment:
| Q |
164 |
gcacacagtttctaaagctaaagtaaaaatctgcataataaactaacacaagcaaagagctgctatattgtttgattctaattagcaacatttcttagtt |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33488937 |
gcacacagtttctaaagctaaagtaaaaatctgcataataaactaacagaagcaaagagctgctatattgtttgattctaattagcaacatttcttagtt |
33488838 |
T |
|
| Q |
264 |
tgaaaaattgaaaagcccatcccttatgcttaattaggataaatatgaaactaagtgaacataagttctatgattgtttaaaaagagattgggcacacag |
363 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||| || |
|
|
| T |
33488837 |
tgaaaaattgaaaagtccatcccttatgcttaattaggataaatatgaaactaattgaacataagttctatgattgcttagaaagagattgggcacatag |
33488738 |
T |
|
| Q |
364 |
attt |
367 |
Q |
| |
|
|||| |
|
|
| T |
33488737 |
attt |
33488734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 10 - 126
Target Start/End: Complemental strand, 33489091 - 33488975
Alignment:
| Q |
10 |
acataggcacaagatttaacttcaacgatcttttaattaatggaacacatggtatgagacttggagcagcaagcagctggcaccatcacaaagaattagg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33489091 |
acataggcacaagatttaacttcaacgatcttttaattaatggaacacatggtatgagacttggagcagcaagcagctggcaccatcacaaagaattagg |
33488992 |
T |
|
| Q |
110 |
aacactaaatcctgaac |
126 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
33488991 |
aacactaaatcctgaac |
33488975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University