View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20926_low_19 (Length: 379)
Name: NF20926_low_19
Description: NF20926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20926_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 47317902 - 47318261
Alignment:
| Q |
1 |
tctgcattagcctagttgtctaatttcaagacttttatccatactgataccttgctggaggcagataatgcagcaaggttgtcagttgtgcttttctgct |
100 |
Q |
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| T |
47317902 |
tctgcattagcctagttgtctaatttcaagacttttatccatactgataccttgctggaggcagataatgcagcaaggttgtcagttgtgcttttctgct |
47318001 |
T |
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| Q |
101 |
gcaggacactctctcatcaattttgttaatagggacaaacttgaattgaaatattctcgtggttttttcttggcggggaattatgcacagtaaggttttt |
200 |
Q |
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| T |
47318002 |
gcaggacactgtctcatcaattttgttaatagggacaaacttgaattgaaatattctcgtggttttttcttggcgggggattatgcacagtaaggttttt |
47318101 |
T |
|
| Q |
201 |
tccacttgttttcgttttgggtttagctgattgcctgataagtgataactatagtatgctatcatttgtctttctgtggaagcctaattactgtttgcag |
300 |
Q |
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| T |
47318102 |
tccacttgttttcgttttgggtttagctgattgcctgataagtgataactatagtatgctatcatttgtcattctgtggaagcctagttactgtttgcag |
47318201 |
T |
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| Q |
301 |
ccctaagaaattttctacccacttaaatgaaaatcatatggtatttaagaatgttagagc |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47318202 |
ccctaagaaattttctacccacttaaatgaaaatcatatggtatttaagaatgttagagc |
47318261 |
T |
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