View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20926_low_21 (Length: 378)
Name: NF20926_low_21
Description: NF20926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20926_low_21 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 9 - 378
Target Start/End: Original strand, 31605322 - 31605704
Alignment:
| Q |
9 |
atgagttgacaactcttgtctcaatcacaagttacaaaaccaaaattgacttaagctgaaattctatgaagtgggctaggaatcttgaattcaggtt--- |
105 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31605322 |
atgaattgacaactcttgtctcaatcacaagttacaaaaccaaaattgactttagctgaaattctatgaggtgggctaggaatcttgaattcaggttcat |
31605421 |
T |
|
| Q |
106 |
---------agaattttcaattgaatcttattgcatcatcaaacaatgtccagccacc-gcaacaagaaaccacaacttttgatgattattccaaagata |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31605422 |
caaaataatagaattttcaattgaatcttattgcatcatcaaacaatgtccagccacccgcaacaagaaaccacaacttttgatgattattccaaagata |
31605521 |
T |
|
| Q |
196 |
ccttgagaaaaatgtccaaaattaattatactatatagtccaaaccacactccaccaaccagaaaattttcctcaaaacttaggtcattttctctacatt |
295 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31605522 |
cctttagaaaaatgtccaaaattaattatactatatagtccaaaccacactccaccaaccagaaaattttcctcaaaacttaggtcattttctctacatt |
31605621 |
T |
|
| Q |
296 |
atgaattttaattcatctaagtatatatcccatttaccagaatcacttttaccaaatgatgcatcaccagaatggaacaacaa |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31605622 |
atgaattttaattcatctaagtatatatcccatttaccagaatcacttttaccaaatgatgcatcaccagaatggaacaacaa |
31605704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University