View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20926_low_24 (Length: 335)
Name: NF20926_low_24
Description: NF20926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20926_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 21613175 - 21613490
Alignment:
| Q |
1 |
ctcaagaactaagacaatccgtgcgtaagtacgatcaatataaatggatagctacacgaggtgtagatgaagaatctcttctcagaggacttccattgga |
100 |
Q |
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| T |
21613175 |
ctcaagaactaagacaatccgtgcgtaagtacgatcaatataaatggatagctacacgaggcgtagatgaagaatctcttctcagaggacttccattgga |
21613274 |
T |
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| Q |
101 |
tcttcgaagagacattaaacgccatctttgtcttgaactagttcgaagagtgagtcaattaatcattaaactttccttctcaattactccctccatctca |
200 |
Q |
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| T |
21613275 |
tcttcgaagagacattaaacgccacctttgtcttgaactagttcgaagagtgagtcaattaatcgttaaactttccttctcaatcactccctccgtctca |
21613374 |
T |
|
| Q |
201 |
tataatgtgctgtttaagattatgtaaatgatttatcatgaacaggttccactgtttgatgcaatggatgagaggatgctagacgcaatatgcgaaagac |
300 |
Q |
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| T |
21613375 |
tattatgtgctgtttaagattatgtaaatgatttatcatgaacaggttccactgtttgatgcaatggatgagaggatgctagacgcaatatgcgaaagac |
21613474 |
T |
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| Q |
301 |
taaagcctgcactatg |
316 |
Q |
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| T |
21613475 |
taaagcctgcactatg |
21613490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 34 - 157
Target Start/End: Complemental strand, 40511296 - 40511173
Alignment:
| Q |
34 |
atcaatataaatggatagctacacgaggtgtagatgaagaatctcttctcagaggacttccattggatcttcgaagagacattaaacgccatctttgtct |
133 |
Q |
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| T |
40511296 |
atcaatataaatgggtggctacacgaggagtagaagaagaagatctgctcaaaggacttccgctggatcttaggagagaaatcaaacgccacctttgtct |
40511197 |
T |
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| Q |
134 |
tgaactagttcgaagagtgagtca |
157 |
Q |
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| T |
40511196 |
tgaactagttcgaggagtaagtca |
40511173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 241 - 316
Target Start/End: Complemental strand, 40510909 - 40510834
Alignment:
| Q |
241 |
aacaggttccactgtttgatgcaatggatgagaggatgctagacgcaatatgcgaaagactaaagcctgcactatg |
316 |
Q |
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|||||||||| |||||||| ||||||||| || |||||||||||||||||||||||||||||||||||| |||| |
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| T |
40510909 |
aacaggttcccttgtttgatcaaatggatgaaagaatgctagacgcaatatgcgaaagactaaagcctgcattatg |
40510834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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