View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20926_low_26 (Length: 301)
Name: NF20926_low_26
Description: NF20926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20926_low_26 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 26 - 295
Target Start/End: Original strand, 16992869 - 16993138
Alignment:
| Q |
26 |
cacttcctccactttcaccaccaccctcagacatcttctcatcactatgttccaacccttcttcaccaacatcttcatattcatcatcatcgatggaaat |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16992869 |
cacttcctccactttcaccaccaccctcagacatcttctcatcactatgttccaacccttcttcaccaacatcttcatattcatcatcatcgatggaaat |
16992968 |
T |
|
| Q |
126 |
tacctcggcatctgcaggaacaacaaaaggttcttcagtcatctttcnnnnnnnagaaccagaaacatattccaaacccttatcttcttcatcactcttt |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16992969 |
tacctcggcatctgcaggaacaacaaaaggttcttcagtcatctttctttttttagaaccagaaacatattccaaacccttatcttcttcatcactcttt |
16993068 |
T |
|
| Q |
226 |
ctccgctttgatgacccaccaagtaaaagagaaccaaacaacggaacattcttgccacaggttctgctcg |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
16993069 |
ctccgctttgatgacccaccaagtaaaagagaaccaaacaacggaacattcttgctacgagttctgctcg |
16993138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 246
Target Start/End: Complemental strand, 10600871 - 10600805
Alignment:
| Q |
180 |
agaaccagaaacatattccaaacccttatcttcttcatcactctttctccgctttgatgacccacca |
246 |
Q |
| |
|
||||||||||| | | || |||| | |||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10600871 |
agaaccagaaagagagtcaaaactcatatcatcttcatcactctttctccgctttgatgaaccacca |
10600805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 16969214 - 16969275
Alignment:
| Q |
101 |
catattcatcatcatcgatggaaattacctcggcatctgcaggaacaacaaaaggttcttca |
162 |
Q |
| |
|
|||| ||||||| || ||||||||||||| |||| || ||||||| ||||||||||||||| |
|
|
| T |
16969214 |
cataatcatcatgttcaatggaaattaccttggcaccttcaggaaccacaaaaggttcttca |
16969275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 54 - 293
Target Start/End: Complemental strand, 35262418 - 35262179
Alignment:
| Q |
54 |
agacatcttctcatcactatgttccaacccttcttcaccaacatcttcatattcatcatcatcgatggaaattacctcggcatctgcaggaacaacaaaa |
153 |
Q |
| |
|
||||||||| ||||||||||| || | ||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
35262418 |
agacatcttgtcatcactatgctctgaaccttcttgaccaacatcttcatattcatcatcatcgatggaaactacctcagcatctgcaggaacaacaaaa |
35262319 |
T |
|
| Q |
154 |
ggttcttcagtcatctttcnnnnnnnagaaccagaaacatattccaaacccttatcttcttcatcactctttctccgctttgatgacccaccaagtaaaa |
253 |
Q |
| |
|
|||||||| ||||||| | ||||| ||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
35262318 |
ggttcttcgttcatcttcctttttttagaacgagaaacatagtccaaccccttatcttcttcatcactctttctccgttttgatgaaccaccaagtaaaa |
35262219 |
T |
|
| Q |
254 |
gagaaccaaacaacggaacattcttgccacaggttctgct |
293 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
35262218 |
gagaaccaaacaacggaacattcttgctacgagttctgct |
35262179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University