View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20926_low_28 (Length: 297)
Name: NF20926_low_28
Description: NF20926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20926_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 26 - 281
Target Start/End: Original strand, 39793833 - 39794088
Alignment:
| Q |
26 |
aaaataaaaggattagggtaagccataaggtctcactgagttccacctatcatagggtgatagtgatataagaaaaatctaagataactaattgtctgta |
125 |
Q |
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| T |
39793833 |
aaaataaaaggattagggtaagcgataaggtctcactgagttccacctatcatagggtgatagtgatatgagaaaaatctaagataactaattgtctgta |
39793932 |
T |
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| Q |
126 |
atatatgtgtatgtttaattatactctcataatcatatattcaatacatttttaaaagttagcgtgtaacaaacaattaacccgagttgattttacgaaa |
225 |
Q |
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| T |
39793933 |
atatatgtgtatgtttaattatactctcataatcatatatgcaatacatttttaaaagttagcgtgtaacaaacaattaacccgagttgattttacgaaa |
39794032 |
T |
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| Q |
226 |
tgactgagtgatgtcgtcctgaaacatccctctgtctatccggctaaactccaatc |
281 |
Q |
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| T |
39794033 |
tgactgagtgatgtcgtcctgaaacatccctctgtctatccggctaaactccaatc |
39794088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 7064023 - 7064079
Alignment:
| Q |
25 |
gaaaataaaaggattagggtaagccataaggtctcactgagttccacctatcatagg |
81 |
Q |
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| T |
7064023 |
gaaaataaaaggattagggtgagacataatgtctcagtgagttccacctatcctagg |
7064079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 7451211 - 7451273
Alignment:
| Q |
31 |
aaaaggattagggtaagccataaggtctcactgagttccacctatcatagggtgatagtgata |
93 |
Q |
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| T |
7451211 |
aaaaggattggggtgagacataaggtctcagtaagttccacctatcctagggtgataatgata |
7451273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 273
Target Start/End: Original strand, 7451357 - 7451450
Alignment:
| Q |
180 |
aaagttagcgtgtaacaaacaattaacccgagttgattttacgaaatgact-gagtgatgtcgtcctgaaacatccctctgtctatccggctaaa |
273 |
Q |
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| T |
7451357 |
aaagttagcgtgtaacaatcaattaacatgagttgattttatggaatggctggggtga-gtagtcttaaaacattcctctttctatccggctaaa |
7451450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 20327074 - 20327029
Alignment:
| Q |
49 |
cataaggtctcactgagttccacctatcatagggtgatagtgatat |
94 |
Q |
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| T |
20327074 |
cataaggtctcagtgacttccacctatcctagggtgaaagtgatat |
20327029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 41572684 - 41572615
Alignment:
| Q |
23 |
aagaaaataaaaggattagggtaagccataaggtctcactgagttccacctatcatagggtgatagtgat |
92 |
Q |
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| T |
41572684 |
aagaaaataaatggattgggatgagacataaggtatcagtgagttccacctatccttgggtgatagtgat |
41572615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 38094092 - 38094046
Alignment:
| Q |
181 |
aagttagcgtgtaacaaacaattaacccgagttgattttacgaaatg |
227 |
Q |
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| T |
38094092 |
aagttagcgtgtaaaaaacaattaatctgagttgattttacaaaatg |
38094046 |
T |
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