View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20926_low_31 (Length: 258)
Name: NF20926_low_31
Description: NF20926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20926_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 15 - 145
Target Start/End: Complemental strand, 22119536 - 22119406
Alignment:
| Q |
15 |
attgtaactaatgagtaggaacattgaaactgaattgaatcttttgttatttaatttccacacatttttccgtatgaatagatatgttggtcagcatttc |
114 |
Q |
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| T |
22119536 |
attgtaactaatgagtaggaacattgaaactgaattgaatcttttgttatttaatttccacacatttttccgtatgaatagatatgttggtcagcatttc |
22119437 |
T |
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| Q |
115 |
ctctcaaaagggacaaccaattaagaatgcc |
145 |
Q |
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||||||||| ||||||||||||||||||||| |
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| T |
22119436 |
ctctcaaaaaggacaaccaattaagaatgcc |
22119406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 22119367 - 22119315
Alignment:
| Q |
184 |
cagttaaacttcattagttattaaaaactgtggatttttctttttgtaactga |
236 |
Q |
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|||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
22119367 |
cagtcaaacttcattagttattaaaaactttggatttttctttttgtaactga |
22119315 |
T |
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