View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20926_low_32 (Length: 255)
Name: NF20926_low_32
Description: NF20926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20926_low_32 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 255
Target Start/End: Complemental strand, 10947663 - 10947421
Alignment:
| Q |
14 |
gagatgaatcgtcagtcgtagtttaaatctcattttgccttattnnnnnnnnn-gttgcaagttatcaaaataaaaaatatcatgatgccgcctcacgtc |
112 |
Q |
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| T |
10947663 |
gagatgaatcgtcagtcatagtttaaatctcattttgccttattaaaaaaaaaagttgcaagttatcaaaataaaaaatatcatgatgccgcctcacgtc |
10947564 |
T |
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| Q |
113 |
aagccataagcattctttaatttgaaatttattatatcacattagttaagcaacaaataacaatcatattccttttattttatcatcaaggttctcttca |
212 |
Q |
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| T |
10947563 |
aagccataagcattctttaatttgaaatttattatatcacattagttaagcaacgaataacaatcatattccttttattttatcatcaaggttctcttca |
10947464 |
T |
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| Q |
213 |
tattcattcatcaacatgcttcaaaatccctttgcgtgaatct |
255 |
Q |
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| T |
10947463 |
tattcattcatcaacatgcttcaaaatccctttgcgtgaatct |
10947421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 110 - 237
Target Start/End: Complemental strand, 10927743 - 10927619
Alignment:
| Q |
110 |
gtcaagccataagcattctttaatttgaaatttattatatcacattagttaagcaacaaataacaatcatattccttttattttatcatcaaggttctct |
209 |
Q |
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| T |
10927743 |
gtcaagccatatgtattgcttaatttgaaatttattatatcacattagttaagcaacaaataacaatcatattccttttatttt---atcaaggttctca |
10927647 |
T |
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| Q |
210 |
tcatattcattcatcaacatgcttcaaa |
237 |
Q |
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| T |
10927646 |
acacattaattcattaacatgcttcaaa |
10927619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 10939332 - 10939263
Alignment:
| Q |
110 |
gtcaagccataagcattctttaatttgaaatttattatatcacattagttaagcaacaaataacaatcat |
179 |
Q |
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| T |
10939332 |
gtcaagccataagcattccttaatttgaaatttattatatcacaatagttaagcaacaaataacaatcat |
10939263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 10938900 - 10938852
Alignment:
| Q |
203 |
gttctcttcatattcattcatcaacatgcttcaaaatccctttgcgtga |
251 |
Q |
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| T |
10938900 |
gttctcttcacattcattcatcaacattcttcaaaatccctttgcgtga |
10938852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 10916797 - 10916728
Alignment:
| Q |
178 |
atattccttttattttatcatcaaggttctcttcatattcattcatcaacatgcttcaaaatccctttgcgtg |
250 |
Q |
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| T |
10916797 |
atattcattttattttatca---aggttctcttcttattcgttcatcaacctgattcaaaaaccctttgcgtg |
10916728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 10940014 - 10939961
Alignment:
| Q |
197 |
atcaaggttctcttcatattcattcatcaacatgcttcaaaatccctttgcgtg |
250 |
Q |
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| T |
10940014 |
atcaaggttctcttcacattcattcgttaacctgcttcaaaatcactttgcgtg |
10939961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 250
Target Start/End: Complemental strand, 18226251 - 18226179
Alignment:
| Q |
175 |
atcatattccttttattttatcatcaaggttctcttcatattcattcatcaacatgcttcaaaatccctttgcgtg |
250 |
Q |
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| T |
18226251 |
atcataatccttttattttatcag---ggtgctcttcacattcattcatcagcctgcttcaaaatccctttgcgtg |
18226179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 9830807 - 9830850
Alignment:
| Q |
14 |
gagatgaatcgtcagtcgtagtttaaatctcattttgccttatt |
57 |
Q |
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| T |
9830807 |
gagatgaatcgtccgtggtaatttaaatctcattttgccttatt |
9830850 |
T |
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